RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.96□□□□□ -0.98
CD44-204ENST00000279452 RGS12O14924 1447 aa8.96□□□□□ -0.98
CD44-204ENST00000279452 NFAT5O94916 1531 aa8.95□□□□□ -0.98
CD44-204ENST00000279452 PPM1GO15355 546 aaPredicted RBP8.95□□□□□ -0.98
CD44-204ENST00000279452 AMPHP49418 695 aa8.95□□□□□ -0.98
CD44-204ENST00000279452 FAM98CQ17RN3 349 aaKnown RBP8.95□□□□□ -0.98
CD44-204ENST00000279452 LARP1Q6PKG0 1096 aaKnown RBP8.95□□□□□ -0.98
CD44-204ENST00000279452 TOM1L2Q6ZVM7 507 aa8.95□□□□□ -0.98
CD44-204ENST00000279452 ARHGEF25Q86VW2 580 aa8.95□□□□□ -0.98
CD44-204ENST00000279452 AATKQ6ZMQ8 1374 aa8.95□□□□□ -0.98
CD44-204ENST00000279452 COL5A2P05997 1499 aaPredicted RBP8.95□□□□□ -0.98
CD44-204ENST00000279452 USP54Q70EL1 1684 aa8.94□□□□□ -0.98
CD44-204ENST00000279452 CAMTA1Q9Y6Y1 1673 aa8.94□□□□□ -0.98
CD44-204ENST00000279452 FBLN1P23142 703 aa8.94□□□□□ -0.98
CD44-204ENST00000279452 RRS1Q15050 365 aaKnown RBP8.94□□□□□ -0.98
CD44-204ENST00000279452 LTV1Q96GA3 475 aaPredicted RBP8.94□□□□□ -0.98
CD44-204ENST00000279452 GLI3P10071 1580 aa8.94□□□□□ -0.98
CD44-204ENST00000279452 LMO7Q8WWI1 1683 aa8.94□□□□□ -0.98
CD44-204ENST00000279452 CC2D1BQ5T0F9 858 aaKnown RBP8.93□□□□□ -0.98
CD44-204ENST00000279452 MORC1Q86VD1 984 aa8.93□□□□□ -0.98
CD44-204ENST00000279452 AXIN2Q9Y2T1 843 aa8.93□□□□□ -0.98
CD44-204ENST00000279452 MAP3K19Q56UN5 1328 aa8.93□□□□□ -0.98
CD44-204ENST00000279452 SPATA31A5Q5VU36 1347 aa8.93□□□□□ -0.98
CD44-204ENST00000279452 SPATA31A7Q8IWB4 1347 aa8.93□□□□□ -0.98
CD44-204ENST00000279452 CDK12Q9NYV4 1490 aaPredicted RBP8.93□□□□□ -0.98
CD44-204ENST00000279452 LTN1O94822 1766 aa8.92□□□□□ -0.98
CD44-204ENST00000279452 CRB1P82279 1406 aa8.92□□□□□ -0.98
CD44-204ENST00000279452 SMG6Q86US8 1419 aaKnown RBP8.92□□□□□ -0.98
CD44-204ENST00000279452 NSD2O96028 1365 aa8.92□□□□□ -0.98
CD44-204ENST00000279452 SPATA31A1Q5TZJ5 1347 aa8.92□□□□□ -0.98
CD44-204ENST00000279452 SEPT12Q8IYM1 358 aa8.92□□□□□ -0.98
CD44-204ENST00000279452 ANKRD24Q8TF21 1146 aa8.92□□□□□ -0.98
CD44-204ENST00000279452 NLRP2Q9NX02 1062 aa8.92□□□□□ -0.98
CD44-204ENST00000279452 ABCC6O95255 1503 aa8.91□□□□□ -0.98
CD44-204ENST00000279452 BLMP54132 1417 aaPredicted RBP8.91□□□□□ -0.98
CD44-204ENST00000279452 WDR17Q8IZU2 1322 aa8.91□□□□□ -0.98
CD44-204ENST00000279452 SOCS7O14512 581 aa8.91□□□□□ -0.98
CD44-204ENST00000279452 HOXC9P31274 260 aa8.91□□□□□ -0.98
CD44-204ENST00000279452 TCP11L2Q8N4U5 519 aa8.91□□□□□ -0.98
CD44-204ENST00000279452 RTL1A6NKG5 1358 aa8.9□□□□□ -0.98
CD44-204ENST00000279452 FLT4P35916 1363 aa8.9□□□□□ -0.98
CD44-204ENST00000279452 ERBB3P21860 1342 aa8.9□□□□□ -0.98
CD44-204ENST00000279452 IP6K1Q92551 441 aa8.9□□□□□ -0.98
CD44-204ENST00000279452 EMILIN1Q9Y6C2 1016 aa8.9□□□□□ -0.98
CD44-204ENST00000279452 KRT27Q7Z3Y8 459 aa8.89□□□□□ -0.99
CD44-204ENST00000279452 COL18A1P39060 1754 aa8.89□□□□□ -0.99
CD44-204ENST00000279452 ANKRD26Q9UPS8 1709 aa8.88□□□□□ -0.99
CD44-204ENST00000279452 PDE3BQ13370 1112 aa8.88□□□□□ -0.99
CD44-204ENST00000279452 HSP90AB2PQ58FF8 381 aa8.88□□□□□ -0.99
CD44-204ENST00000279452 THRAP3Q9Y2W1 955 aaKnown RBP8.88□□□□□ -0.99
CD44-204ENST00000279452 RGPD5Q99666 1765 aa8.87□□□□□ -0.99
CD44-204ENST00000279452 AMER1Q5JTC6 1135 aaPredicted RBP8.87□□□□□ -0.99
CD44-204ENST00000279452 FAM182BQ5T319 152 aa8.87□□□□□ -0.99
CD44-204ENST00000279452 BARGINQ6ZT62 677 aa8.87□□□□□ -0.99
CD44-204ENST00000279452 USHBP1Q8N6Y0 703 aa8.87□□□□□ -0.99
CD44-204ENST00000279452 CARD10Q9BWT7 1032 aa8.87□□□□□ -0.99
CD44-204ENST00000279452 KIF24Q5T7B8 1368 aa8.86□□□□□ -0.99
CD44-204ENST00000279452 PEAK1Q9H792 1746 aa8.86□□□□□ -0.99
CD44-204ENST00000279452 THSD7AQ9UPZ6 1657 aa8.86□□□□□ -0.99
CD44-204ENST00000279452 DDX10Q13206 875 aaKnown RBP8.86□□□□□ -0.99
CD44-204ENST00000279452 DDB1Q16531 1140 aa8.86□□□□□ -0.99
CD44-204ENST00000279452 POLKQ9UBT6 870 aa8.86□□□□□ -0.99
CD44-204ENST00000279452 INSRP06213 1382 aa8.86□□□□□ -0.99
CD44-204ENST00000279452 PER1O15534 1290 aaPredicted RBP8.85□□□□□ -0.99
CD44-204ENST00000279452 ONECUT3O60422 494 aaPredicted RBP8.85□□□□□ -0.99
CD44-204ENST00000279452 IL2RBP14784 551 aa8.85□□□□□ -0.99
CD44-204ENST00000279452 SF3B2Q13435 895 aaKnown RBP8.85□□□□□ -0.99
CD44-204ENST00000279452 CDCA7Q9BWT1 371 aaPredicted RBP8.85□□□□□ -0.99
CD44-204ENST00000279452 FAM208AQ9UK61 1670 aaKnown RBP8.85□□□□□ -0.99
CD44-204ENST00000279452 LRRC37A3O60309 1634 aa8.84□□□□□ -0.99
CD44-204ENST00000279452 EXOC5O00471 708 aa8.84□□□□□ -0.99
CD44-204ENST00000279452 RAPGEF4Q8WZA2 1011 aa8.84□□□□□ -0.99
CD44-204ENST00000279452 BRWD3Q6RI45 1802 aa8.83□□□□□ -1
CD44-204ENST00000279452 EIF4A2Q14240 407 aaKnown RBP8.83□□□□□ -1
CD44-204ENST00000279452 NBPF6Q5VWK0 638 aa8.83□□□□□ -1
CD44-204ENST00000279452 UPF1Q92900 1129 aaKnown RBP eCLIP8.83□□□□□ -1
CD44-204ENST00000279452 NBPF4Q96M43 638 aa8.83□□□□□ -1
CD44-204ENST00000279452 WNK3Q9BYP7 1800 aa8.82□□□□□ -1
CD44-204ENST00000279452 OVOS2A0A0G2JMS6 1433 aa8.82□□□□□ -1
CD44-204ENST00000279452 DISP2A7MBM2 1401 aa8.82□□□□□ -1
CD44-204ENST00000279452 TNS2Q63HR2 1409 aa8.82□□□□□ -1
CD44-204ENST00000279452 ZNF316A6NFI3 1004 aaPredicted RBP8.82□□□□□ -1
CD44-204ENST00000279452 TATP17735 454 aaPredicted RBP8.82□□□□□ -1
CD44-204ENST00000279452 MTHFSP49914 203 aa8.82□□□□□ -1
CD44-204ENST00000279452 DDX54Q8TDD1 881 aaKnown RBP8.82□□□□□ -1
CD44-204ENST00000279452 NPC1L1Q9UHC9 1359 aa8.82□□□□□ -1
CD44-204ENST00000279452 PARP4Q9UKK3 1724 aaKnown RBP8.82□□□□□ -1
CD44-204ENST00000279452 MEGF6O75095 1541 aa8.81□□□□□ -1
CD44-204ENST00000279452 MAPK8IP2Q13387 824 aaPredicted RBP8.81□□□□□ -1
CD44-204ENST00000279452 FAM196AQ6ZSG2 479 aa8.81□□□□□ -1
CD44-204ENST00000279452 CFAP53Q96M91 514 aa8.81□□□□□ -1
CD44-204ENST00000279452 U2SURPO15042 1029 aaKnown RBP8.8□□□□□ -1
CD44-204ENST00000279452 TRIM37O94972 964 aa8.8□□□□□ -1
CD44-204ENST00000279452 EYA1Q99502 592 aa8.8□□□□□ -1
CD44-204ENST00000279452 MAP2P11137 1827 aaKnown RBP8.8□□□□□ -1
CD44-204ENST00000279452 RGPD2P0DJD1 1756 aa8.79□□□□□ -1
CD44-204ENST00000279452 DIAPH1O60610 1272 aaKnown RBP8.79□□□□□ -1
CD44-204ENST00000279452 PPP2R1AP30153 589 aa8.79□□□□□ -1
CD44-204ENST00000279452 MARCH10Q8NA82 808 aaPredicted RBP8.79□□□□□ -1
CD44-204ENST00000279452 ZCRB1Q8TBF4 217 aaKnown RBP8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms