RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 IFT57Q9NWB7 429 aa14.34□□□□□ -0.11
MSH3-201ENST00000265081 EMILIN1Q9Y6C2 1016 aa14.34□□□□□ -0.11
MSH3-201ENST00000265081 SSH1Q8WYL5 1049 aa14.34□□□□□ -0.11
MSH3-201ENST00000265081 TRIM27P14373 513 aa14.34□□□□□ -0.11
MSH3-201ENST00000265081 TTC21AQ8NDW8 1320 aa14.33□□□□□ -0.12
MSH3-201ENST00000265081 PRKAR2BP31323 418 aa14.33□□□□□ -0.12
MSH3-201ENST00000265081 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.33□□□□□ -0.12
MSH3-201ENST00000265081 PHACTR3Q96KR7 559 aa14.33□□□□□ -0.12
MSH3-201ENST00000265081 KIF16BQ96L93 1317 aa14.33□□□□□ -0.12
MSH3-201ENST00000265081 DZIP1LQ8IYY4 767 aaKnown RBP14.33□□□□□ -0.12
MSH3-201ENST00000265081 ARHGAP45Q92619 1136 aa14.33□□□□□ -0.12
MSH3-201ENST00000265081 ARHGEF10O15013 1369 aa14.33□□□□□ -0.12
MSH3-201ENST00000265081 KIF24Q5T7B8 1368 aa14.33□□□□□ -0.12
MSH3-201ENST00000265081 ATF7IPQ6VMQ6 1270 aa14.32□□□□□ -0.12
MSH3-201ENST00000265081 KDRP35968 1356 aa14.32□□□□□ -0.12
MSH3-201ENST00000265081 NCKAP5LQ9HCH0 1330 aa14.32□□□□□ -0.12
MSH3-201ENST00000265081 CAMTA1Q9Y6Y1 1673 aa14.32□□□□□ -0.12
MSH3-201ENST00000265081 DDRGK1Q96HY6 314 aa14.32□□□□□ -0.12
MSH3-201ENST00000265081 COG3Q96JB2 828 aa14.32□□□□□ -0.12
MSH3-201ENST00000265081 ZBTB47Q9UFB7 747 aaPredicted RBP14.32□□□□□ -0.12
MSH3-201ENST00000265081 ZRANB1Q9UGI0 708 aa14.32□□□□□ -0.12
MSH3-201ENST00000265081 FAM208AQ9UK61 1670 aaKnown RBP14.32□□□□□ -0.12
MSH3-201ENST00000265081 CALD1Q05682 793 aaKnown RBP14.31□□□□□ -0.12
MSH3-201ENST00000265081 LTN1O94822 1766 aa14.31□□□□□ -0.12
MSH3-201ENST00000265081 ACEP12821 1306 aa14.31□□□□□ -0.12
MSH3-201ENST00000265081 ZBTB40Q9NUA8 1239 aa14.3□□□□□ -0.12
MSH3-201ENST00000265081 DDX19BQ9UMR2 479 aa14.29□□□□□ -0.12
MSH3-201ENST00000265081 FBLN1P23142 703 aa14.29□□□□□ -0.12
MSH3-201ENST00000265081 FRAT1Q92837 279 aaPredicted RBP14.29□□□□□ -0.12
MSH3-201ENST00000265081 ABCC4O15439 1325 aa14.29□□□□□ -0.12
MSH3-201ENST00000265081 RGS12O14924 1447 aa14.29□□□□□ -0.12
MSH3-201ENST00000265081 CRB1P82279 1406 aa14.29□□□□□ -0.12
MSH3-201ENST00000265081 VAMP4O75379 141 aa14.29□□□□□ -0.12
MSH3-201ENST00000265081 ERICH6Q7L0X2 663 aa14.29□□□□□ -0.12
MSH3-201ENST00000265081 NFAT5O94916 1531 aa14.29□□□□□ -0.12
MSH3-201ENST00000265081 MED1Q15648 1581 aaPredicted RBP14.29□□□□□ -0.12
MSH3-201ENST00000265081 CANXP27824 592 aaKnown RBP14.28□□□□□ -0.12
MSH3-201ENST00000265081 MRPL50Q8N5N7 158 aaKnown RBP14.28□□□□□ -0.12
MSH3-201ENST00000265081 RWDD1Q9H446 243 aaPredicted RBP14.28□□□□□ -0.12
MSH3-201ENST00000265081 SENP3Q9H4L4 574 aaPredicted RBP14.28□□□□□ -0.12
MSH3-201ENST00000265081 SMC5Q8IY18 1101 aa14.28□□□□□ -0.12
MSH3-201ENST00000265081 CFAP44Q96MT7 982 aa14.28□□□□□ -0.12
MSH3-201ENST00000265081 SBNO1A3KN83 1393 aa14.27□□□□□ -0.12
MSH3-201ENST00000265081 KIAA0232Q92628 1395 aa14.27□□□□□ -0.12
MSH3-201ENST00000265081 LMOD3Q0VAK6 560 aa14.27□□□□□ -0.12
MSH3-201ENST00000265081 SMC4Q9NTJ3 1288 aa14.27□□□□□ -0.12
MSH3-201ENST00000265081 NOB1Q9ULX3 412 aaKnown RBP14.27□□□□□ -0.12
MSH3-201ENST00000265081 GNAI1P63096 354 aa14.27□□□□□ -0.12
MSH3-201ENST00000265081 TRPM3Q9HCF6 1732 aaPredicted RBP14.27□□□□□ -0.13
MSH3-201ENST00000265081 EIF4A2Q14240 407 aaKnown RBP14.26□□□□□ -0.13
MSH3-201ENST00000265081 BCL2L13Q9BXK5 485 aa14.26□□□□□ -0.13
MSH3-201ENST00000265081 EID1Q9Y6B2 187 aa14.26□□□□□ -0.13
MSH3-201ENST00000265081 TUBGCP6Q96RT7 1819 aa14.26□□□□□ -0.13
MSH3-201ENST00000265081 CACNA1FO60840 1977 aa14.25□□□□□ -0.13
MSH3-201ENST00000265081 LMTK3Q96Q04 1460 aa14.25□□□□□ -0.13
MSH3-201ENST00000265081 MBIPQ9NS73 344 aa14.25□□□□□ -0.13
MSH3-201ENST00000265081 AMOTL2Q9Y2J4 779 aa14.25□□□□□ -0.13
MSH3-201ENST00000265081 LMO7Q8WWI1 1683 aa14.25□□□□□ -0.13
MSH3-201ENST00000265081 PDZRN3Q9UPQ7 1066 aa14.25□□□□□ -0.13
MSH3-201ENST00000265081 IPO8O15397 1037 aaKnown RBP14.25□□□□□ -0.13
MSH3-201ENST00000265081 THEMISQ8N1K5 641 aaPredicted RBP14.25□□□□□ -0.13
MSH3-201ENST00000265081 MST1RQ04912 1400 aa14.24□□□□□ -0.13
MSH3-201ENST00000265081 KDM3BQ7LBC6 1761 aa14.24□□□□□ -0.13
MSH3-201ENST00000265081 RRS1Q15050 365 aaKnown RBP14.24□□□□□ -0.13
MSH3-201ENST00000265081 FLT4P35916 1363 aa14.24□□□□□ -0.13
MSH3-201ENST00000265081 TMEM57Q8N5G2 664 aa14.24□□□□□ -0.13
MSH3-201ENST00000265081 ADAMTS7Q9UKP4 1686 aa14.24□□□□□ -0.13
MSH3-201ENST00000265081 CEBPAP49715 358 aaPredicted RBP14.23□□□□□ -0.13
MSH3-201ENST00000265081 USP35Q9P2H5 1018 aa14.23□□□□□ -0.13
MSH3-201ENST00000265081 NCAPD2Q15021 1401 aa14.23□□□□□ -0.13
MSH3-201ENST00000265081 SLIT3O75094 1523 aa14.23□□□□□ -0.13
MSH3-201ENST00000265081 RTL1A6NKG5 1358 aa14.23□□□□□ -0.13
MSH3-201ENST00000265081 HMOX1P09601 288 aa14.22□□□□□ -0.13
MSH3-201ENST00000265081 IGSF1Q8N6C5 1336 aa14.22□□□□□ -0.13
MSH3-201ENST00000265081 ZBTB7BO15156 539 aaPredicted RBP14.22□□□□□ -0.13
MSH3-201ENST00000265081 FTSJ3Q8IY81 847 aaKnown RBP14.22□□□□□ -0.13
MSH3-201ENST00000265081 CHL1O00533 1208 aa14.21□□□□□ -0.13
MSH3-201ENST00000265081 RGS3P49796 1198 aa14.21□□□□□ -0.13
MSH3-201ENST00000265081 KIF1AQ12756 1690 aa14.21□□□□□ -0.14
MSH3-201ENST00000265081 CRYBG1Q9Y4K1 1723 aa14.2□□□□□ -0.14
MSH3-201ENST00000265081 SIPA1L3O60292 1781 aaPredicted RBP14.2□□□□□ -0.14
MSH3-201ENST00000265081 TSPYL6Q8N831 410 aa14.2□□□□□ -0.14
MSH3-201ENST00000265081 NUCB1Q02818 461 aa14.2□□□□□ -0.14
MSH3-201ENST00000265081 SEC24BO95487 1268 aa14.19□□□□□ -0.14
MSH3-201ENST00000265081 NEFMP07197 916 aa14.19□□□□□ -0.14
MSH3-201ENST00000265081 ADGRL3Q9HAR2 1447 aa14.19□□□□□ -0.14
MSH3-201ENST00000265081 MAP3K19Q56UN5 1328 aa14.18□□□□□ -0.14
MSH3-201ENST00000265081 SETD1BQ9UPS6 1966 aaKnown RBP14.18□□□□□ -0.14
MSH3-201ENST00000265081 NPM2Q86SE8 214 aaKnown RBP14.18□□□□□ -0.14
MSH3-201ENST00000265081 TBC1D32Q96NH3 1257 aa14.18□□□□□ -0.14
MSH3-201ENST00000265081 SLC26A8Q96RN1 970 aa14.18□□□□□ -0.14
MSH3-201ENST00000265081 ATP10DQ9P241 1426 aa14.18□□□□□ -0.14
MSH3-201ENST00000265081 ALS2Q96Q42 1657 aa14.18□□□□□ -0.14
MSH3-201ENST00000265081 C8orf58Q8NAV2 365 aa14.17□□□□□ -0.14
MSH3-201ENST00000265081 CHMP4BQ9H444 224 aaKnown RBP14.17□□□□□ -0.14
MSH3-201ENST00000265081 PPM1GO15355 546 aaPredicted RBP14.17□□□□□ -0.14
MSH3-201ENST00000265081 AEBP1Q8IUX7 1158 aa14.17□□□□□ -0.14
MSH3-201ENST00000265081 RGPD2P0DJD1 1756 aa14.17□□□□□ -0.14
MSH3-201ENST00000265081 ITPRIPQ8IWB1 547 aa14.17□□□□□ -0.14
MSH3-201ENST00000265081 THUMPD2Q9BTF0 503 aaKnown RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms