RNA–Protein interactions for RNA: ENST00000216484.6

SPTLC2-201, Transcript of serine palmitoyltransferase long chain base subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC2, Length 8,170 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC2-201ENST00000216484 TIGD1Q96MW7 591 aa17.17■□□□□ 0.34
SPTLC2-201ENST00000216484 ARHGAP29Q52LW3 1261 aa17.17■□□□□ 0.34
SPTLC2-201ENST00000216484 SPDYE4A6NLX3 237 aa17.16■□□□□ 0.34
SPTLC2-201ENST00000216484 BMP2KQ9NSY1 1161 aaPredicted RBP17.16■□□□□ 0.34
SPTLC2-201ENST00000216484 WDR70Q9NW82 654 aa17.16■□□□□ 0.34
SPTLC2-201ENST00000216484 HIP1O00291 1037 aa17.16■□□□□ 0.34
SPTLC2-201ENST00000216484 KIF6Q6ZMV9 814 aa17.16■□□□□ 0.34
SPTLC2-201ENST00000216484 PDCL2Q8N4E4 241 aa17.16■□□□□ 0.34
SPTLC2-201ENST00000216484 UBXN4Q92575 508 aa17.16■□□□□ 0.34
SPTLC2-201ENST00000216484 HOMER2Q9NSB8 354 aa17.16■□□□□ 0.34
SPTLC2-201ENST00000216484 EVC2Q86UK5 1308 aa17.16■□□□□ 0.34
SPTLC2-201ENST00000216484 MCM2P49736 904 aa17.16■□□□□ 0.34
SPTLC2-201ENST00000216484 TTC39AQ5SRH9 613 aa17.16■□□□□ 0.34
SPTLC2-201ENST00000216484 DNAI2Q9GZS0 605 aa17.16■□□□□ 0.34
SPTLC2-201ENST00000216484 CEP57L1Q8IYX8 460 aa17.15■□□□□ 0.34
SPTLC2-201ENST00000216484 CCDC160A6NGH7 325 aa17.15■□□□□ 0.34
SPTLC2-201ENST00000216484 RRP9O43818 475 aaKnown RBP17.15■□□□□ 0.34
SPTLC2-201ENST00000216484 MICALCLQ6ZW33 695 aa17.15■□□□□ 0.34
SPTLC2-201ENST00000216484 ZBED9Q6R2W3 1325 aa17.15■□□□□ 0.34
SPTLC2-201ENST00000216484 ZNF76P36508 570 aa17.15■□□□□ 0.34
SPTLC2-201ENST00000216484 RBM5P52756 815 aaKnown RBP eCLIP17.15■□□□□ 0.34
SPTLC2-201ENST00000216484 RAI14Q9P0K7 980 aa17.15■□□□□ 0.34
SPTLC2-201ENST00000216484 TTC16Q8NEE8 873 aa17.14■□□□□ 0.33
SPTLC2-201ENST00000216484 NUP133Q8WUM0 1156 aa17.14■□□□□ 0.33
SPTLC2-201ENST00000216484 APAF1O14727 1248 aa17.14■□□□□ 0.33
SPTLC2-201ENST00000216484 FERP16591 822 aa17.14■□□□□ 0.33
SPTLC2-201ENST00000216484 CBX1P83916 185 aa17.14■□□□□ 0.33
SPTLC2-201ENST00000216484 IMMTQ16891 758 aaKnown RBP17.14■□□□□ 0.33
SPTLC2-201ENST00000216484 MACROD2A1Z1Q3 448 aa17.14■□□□□ 0.33
SPTLC2-201ENST00000216484 RAB3GAP2Q9H2M9 1393 aa17.14■□□□□ 0.33
SPTLC2-201ENST00000216484 WASHC2AQ641Q2 1341 aa17.13■□□□□ 0.33
SPTLC2-201ENST00000216484 LUZP1Q86V48 1076 aa17.13■□□□□ 0.33
SPTLC2-201ENST00000216484 GIGYF2Q6Y7W6 1299 aaKnown RBP17.13■□□□□ 0.33
SPTLC2-201ENST00000216484 POLR3GO15318 223 aaPredicted RBP17.13■□□□□ 0.33
SPTLC2-201ENST00000216484 MCM3P25205 808 aa17.13■□□□□ 0.33
SPTLC2-201ENST00000216484 TRERF1Q96PN7 1200 aa17.13■□□□□ 0.33
SPTLC2-201ENST00000216484 TNIKQ9UKE5 1360 aa17.12■□□□□ 0.33
SPTLC2-201ENST00000216484 PPP1R12BO60237 982 aaPredicted RBP17.12■□□□□ 0.33
SPTLC2-201ENST00000216484 SPA17Q15506 151 aa17.12■□□□□ 0.33
SPTLC2-201ENST00000216484 CNNM1Q9NRU3 951 aa17.12■□□□□ 0.33
SPTLC2-201ENST00000216484 ANKRD30AQ9BXX3 1397 aa17.12■□□□□ 0.33
SPTLC2-201ENST00000216484 FILIP1Q7Z7B0 1213 aa17.12■□□□□ 0.33
SPTLC2-201ENST00000216484 DIAPH1O60610 1272 aaKnown RBP17.12■□□□□ 0.33
SPTLC2-201ENST00000216484 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.12■□□□□ 0.33
SPTLC2-201ENST00000216484 GBP3Q9H0R5 595 aa17.12■□□□□ 0.33
SPTLC2-201ENST00000216484 WRNQ14191 1432 aaPredicted RBP eCLIP17.12■□□□□ 0.33
SPTLC2-201ENST00000216484 DNA2P51530 1060 aa17.11■□□□□ 0.33
SPTLC2-201ENST00000216484 CHMP4BP1P59074 171 aa17.11■□□□□ 0.33
SPTLC2-201ENST00000216484 HMOX1P09601 288 aa17.11■□□□□ 0.33
SPTLC2-201ENST00000216484 SPECC1Q5M775 1068 aa17.11■□□□□ 0.33
SPTLC2-201ENST00000216484 LARP1Q6PKG0 1096 aaKnown RBP17.11■□□□□ 0.33
SPTLC2-201ENST00000216484 IL27Q8NEV9 243 aa17.11■□□□□ 0.33
SPTLC2-201ENST00000216484 ANKRD1Q15327 319 aa17.11■□□□□ 0.33
SPTLC2-201ENST00000216484 CFAP100Q494V2 611 aa17.11■□□□□ 0.33
SPTLC2-201ENST00000216484 CTNNA2P26232 953 aa17.11■□□□□ 0.33
SPTLC2-201ENST00000216484 KRT85P78386 507 aa17.11■□□□□ 0.33
SPTLC2-201ENST00000216484 PIBF1Q8WXW3 757 aa17.1■□□□□ 0.33
SPTLC2-201ENST00000216484 ZFP91Q96JP5 570 aaPredicted RBP17.1■□□□□ 0.33
SPTLC2-201ENST00000216484 NOL7Q9UMY1 257 aaKnown RBP17.1■□□□□ 0.33
SPTLC2-201ENST00000216484 UPF3BQ9BZI7 483 aaKnown RBP17.1■□□□□ 0.33
SPTLC2-201ENST00000216484 TMEM87AQ8NBN3 555 aa17.1■□□□□ 0.33
SPTLC2-201ENST00000216484 PANK1Q8TE04 598 aa17.1■□□□□ 0.33
SPTLC2-201ENST00000216484 GNL3LQ9NVN8 582 aaKnown RBP17.1■□□□□ 0.33
SPTLC2-201ENST00000216484 C6orf163Q5TEZ5 329 aa17.09■□□□□ 0.33
SPTLC2-201ENST00000216484 APBB1IPQ7Z5R6 666 aaPredicted RBP17.09■□□□□ 0.33
SPTLC2-201ENST00000216484 FAM107BQ9H098 131 aa17.09■□□□□ 0.33
SPTLC2-201ENST00000216484 KIF5CO60282 957 aa17.09■□□□□ 0.33
SPTLC2-201ENST00000216484 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.09■□□□□ 0.33
SPTLC2-201ENST00000216484 CALCOCO1Q9P1Z2 691 aa17.09■□□□□ 0.33
SPTLC2-201ENST00000216484 GRPEL1Q9HAV7 217 aa17.09■□□□□ 0.33
SPTLC2-201ENST00000216484 SMTNL1A8MU46 457 aa17.09■□□□□ 0.33
SPTLC2-201ENST00000216484 CCDC150Q8NCX0 1101 aa17.09■□□□□ 0.33
SPTLC2-201ENST00000216484 CYP46A1Q9Y6A2 500 aa17.08■□□□□ 0.33
SPTLC2-201ENST00000216484 NAP1L3Q99457 506 aaPredicted RBP17.08■□□□□ 0.33
SPTLC2-201ENST00000216484 PABPN1LA6NDY0 278 aaKnown RBP17.08■□□□□ 0.32
SPTLC2-201ENST00000216484 CCDC158Q5M9N0 1113 aa17.08■□□□□ 0.32
SPTLC2-201ENST00000216484 MRPS9P82933 396 aaKnown RBP17.08■□□□□ 0.32
SPTLC2-201ENST00000216484 CGNQ9P2M7 1197 aaKnown RBP17.08■□□□□ 0.32
SPTLC2-201ENST00000216484 SURF6O75683 361 aaKnown RBP17.08■□□□□ 0.32
SPTLC2-201ENST00000216484 CCDC57Q2TAC2 916 aa17.08■□□□□ 0.32
SPTLC2-201ENST00000216484 DRC1Q96MC2 740 aa17.08■□□□□ 0.32
SPTLC2-201ENST00000216484 MINK1Q8N4C8 1332 aaPredicted RBP17.08■□□□□ 0.32
SPTLC2-201ENST00000216484 TAOK3Q9H2K8 898 aa17.07■□□□□ 0.32
SPTLC2-201ENST00000216484 UACAQ9BZF9 1416 aa17.07■□□□□ 0.32
SPTLC2-201ENST00000216484 LARP1BQ659C4 914 aaKnown RBP17.07■□□□□ 0.32
SPTLC2-201ENST00000216484 SPATA32Q96LK8 384 aa17.07■□□□□ 0.32
SPTLC2-201ENST00000216484 ST20-MTHFSA0A0A6YYL1 179 aa17.07■□□□□ 0.32
SPTLC2-201ENST00000216484 CLGNO14967 610 aa17.07■□□□□ 0.32
SPTLC2-201ENST00000216484 USP5P45974 858 aa17.07■□□□□ 0.32
SPTLC2-201ENST00000216484 CACNA2D4Q7Z3S7 1137 aa17.07■□□□□ 0.32
SPTLC2-201ENST00000216484 RAPGEF4Q8WZA2 1011 aa17.07■□□□□ 0.32
SPTLC2-201ENST00000216484 MAP4K4O95819 1239 aaPredicted RBP17.06■□□□□ 0.32
SPTLC2-201ENST00000216484 PTPN14Q15678 1187 aa17.06■□□□□ 0.32
SPTLC2-201ENST00000216484 CTR9Q6PD62 1173 aa17.06■□□□□ 0.32
SPTLC2-201ENST00000216484 SRRTQ9BXP5 876 aaKnown RBP17.06■□□□□ 0.32
SPTLC2-201ENST00000216484 WDR33Q9C0J8 1336 aaKnown RBP17.06■□□□□ 0.32
SPTLC2-201ENST00000216484 HLTFQ14527 1009 aaKnown RBP eCLIP17.06■□□□□ 0.32
SPTLC2-201ENST00000216484 ZNF428Q96B54 188 aa17.06■□□□□ 0.32
SPTLC2-201ENST00000216484 NACAP1Q9BZK3 213 aa17.06■□□□□ 0.32
SPTLC2-201ENST00000216484 PPP1R14CQ8TAE6 165 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms