RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 LMAN1P49257 510 aa15.09■□□□□ 0.01
NUP54-213ENST00000513352 NUBP1P53384 320 aa15.09■□□□□ 0.01
NUP54-213ENST00000513352 PARP6Q2NL67 630 aa15.09■□□□□ 0.01
NUP54-213ENST00000513352 BRAT1Q6PJG6 821 aa15.09■□□□□ 0.01
NUP54-213ENST00000513352 USP30Q70CQ3 517 aa15.09■□□□□ 0.01
NUP54-213ENST00000513352 TTC7BQ86TV6 843 aa15.09■□□□□ 0.01
NUP54-213ENST00000513352 PRPF39Q86UA1 669 aaKnown RBP15.09■□□□□ 0.01
NUP54-213ENST00000513352 KBTBD6Q86V97 674 aa15.09■□□□□ 0.01
NUP54-213ENST00000513352 FAM160A2Q8N612 972 aaPredicted RBP15.09■□□□□ 0.01
NUP54-213ENST00000513352 GLIS1Q8NBF1 620 aa15.09■□□□□ 0.01
NUP54-213ENST00000513352 SPATA4Q8NEY3 305 aa15.09■□□□□ 0.01
NUP54-213ENST00000513352 LPCAT1Q8NF37 534 aa15.09■□□□□ 0.01
NUP54-213ENST00000513352 OR14C36Q8NHC7 312 aa15.09■□□□□ 0.01
NUP54-213ENST00000513352 LRRC45Q96CN5 670 aa15.09■□□□□ 0.01
NUP54-213ENST00000513352 OXNAD1Q96HP4 312 aaPredicted RBP15.09■□□□□ 0.01
NUP54-213ENST00000513352 PPP1R2P1Q96PQ5 205 aa15.09■□□□□ 0.01
NUP54-213ENST00000513352 TDRD1Q9BXT4 1180 aaKnown RBP15.09■□□□□ 0.01
NUP54-213ENST00000513352 PCDH9Q9HC56 1237 aa15.09■□□□□ 0.01
NUP54-213ENST00000513352 ITM2CQ9NQX7 267 aa15.09■□□□□ 0.01
NUP54-213ENST00000513352 RAB6BQ9NRW1 208 aa15.09■□□□□ 0.01
NUP54-213ENST00000513352 GOLGA6AQ9NYA3 693 aa15.09■□□□□ 0.01
NUP54-213ENST00000513352 FEZ2Q9UHY8 353 aaPredicted RBP15.09■□□□□ 0.01
NUP54-213ENST00000513352 UPK3BL1B0FP48 263 aa15.08■□□□□ 0
NUP54-213ENST00000513352 UPK3BL2E5RIL1 263 aa15.08■□□□□ 0
NUP54-213ENST00000513352 TRAFD1O14545 582 aaPredicted RBP15.08■□□□□ 0
NUP54-213ENST00000513352 MAP3K13O43283 966 aa15.08■□□□□ 0
NUP54-213ENST00000513352 PGLSO95336 258 aa15.08■□□□□ 0
NUP54-213ENST00000513352 METTL18O95568 372 aa15.08■□□□□ 0
NUP54-213ENST00000513352 PRKCGP05129 697 aa15.08■□□□□ 0
NUP54-213ENST00000513352 ADRB3P13945 408 aa15.08■□□□□ 0
NUP54-213ENST00000513352 CD6P30203 668 aa15.08■□□□□ 0
NUP54-213ENST00000513352 OXTRP30559 389 aa15.08■□□□□ 0
NUP54-213ENST00000513352 FDFT1P37268 417 aa15.08■□□□□ 0
NUP54-213ENST00000513352 WNT3AP56704 352 aa15.08■□□□□ 0
NUP54-213ENST00000513352 BASP1P80723 227 aaKnown RBP15.08■□□□□ 0
NUP54-213ENST00000513352 DR1Q01658 176 aa15.08■□□□□ 0
NUP54-213ENST00000513352 MPP3Q13368 585 aa15.08■□□□□ 0
NUP54-213ENST00000513352 IHHQ14623 411 aa15.08■□□□□ 0
NUP54-213ENST00000513352 ZNF528Q3MIS6 628 aa15.08■□□□□ 0
NUP54-213ENST00000513352 SYCP2LQ5T4T6 812 aa15.08■□□□□ 0
NUP54-213ENST00000513352 AGBL4Q5VU57 503 aa15.08■□□□□ 0
NUP54-213ENST00000513352 CCDC70Q6NSX1 233 aa15.08■□□□□ 0
NUP54-213ENST00000513352 C4orf22Q6V702 233 aa15.08■□□□□ 0
NUP54-213ENST00000513352 CEP68Q76N32 757 aa15.08■□□□□ 0
NUP54-213ENST00000513352 ZSWIM9Q86XI8 627 aa15.08■□□□□ 0
NUP54-213ENST00000513352 MNS1Q8NEH6 495 aa15.08■□□□□ 0
NUP54-213ENST00000513352 RMDN1Q96DB5 314 aa15.08■□□□□ 0
NUP54-213ENST00000513352 TOE1Q96GM8 510 aaKnown RBP15.08■□□□□ 0
NUP54-213ENST00000513352 FICDQ9BVA6 458 aa15.08■□□□□ 0
NUP54-213ENST00000513352 HDAC8Q9BY41 377 aa15.08■□□□□ 0
NUP54-213ENST00000513352 FAM126AQ9BYI3 521 aaPredicted RBP15.08■□□□□ 0
NUP54-213ENST00000513352 BTBD1Q9H0C5 482 aa15.08■□□□□ 0
NUP54-213ENST00000513352 ZSCAN32Q9NX65 697 aa15.08■□□□□ 0
NUP54-213ENST00000513352 DKK3Q9UBP4 350 aa15.08■□□□□ 0
NUP54-213ENST00000513352 ASIC3Q9UHC3 531 aa15.08■□□□□ 0
NUP54-213ENST00000513352 FZD4Q9ULV1 537 aa15.08■□□□□ 0
NUP54-213ENST00000513352 AAR2Q9Y312 384 aaKnown RBP15.08■□□□□ 0
NUP54-213ENST00000513352 IGHV1OR15-9A0A0B4J2B8 117 aa15.07■□□□□ 0
NUP54-213ENST00000513352 CCDC163A0A0D9SF12 145 aa15.07■□□□□ 0
NUP54-213ENST00000513352 A0A1W2PQ67 120 aa15.07■□□□□ 0
NUP54-213ENST00000513352 H0Y858 1186 aa15.07■□□□□ 0
NUP54-213ENST00000513352 HTRA2O43464 458 aaPredicted RBP15.07■□□□□ 0
NUP54-213ENST00000513352 RPP40O75818 363 aaKnown RBP15.07■□□□□ 0
NUP54-213ENST00000513352 PDHA1P08559 390 aa15.07■□□□□ 0
NUP54-213ENST00000513352 TIMP2P16035 220 aa15.07■□□□□ 0
NUP54-213ENST00000513352 CTPS1P17812 591 aa15.07■□□□□ 0
NUP54-213ENST00000513352 ABL2P42684 1182 aa15.07■□□□□ 0
NUP54-213ENST00000513352 POLR2LP62875 67 aaKnown RBP15.07■□□□□ 0
NUP54-213ENST00000513352 FAM193AP78312 1265 aa15.07■□□□□ 0
NUP54-213ENST00000513352 CDK18Q07002 472 aa15.07■□□□□ 0
NUP54-213ENST00000513352 GPS1Q13098 491 aa15.07■□□□□ 0
NUP54-213ENST00000513352 SRSF5Q13243 272 aaKnown RBP15.07■□□□□ 0
NUP54-213ENST00000513352 GALNT3Q14435 633 aa15.07■□□□□ 0
NUP54-213ENST00000513352 SPARCL1Q14515 664 aa15.07■□□□□ 0
NUP54-213ENST00000513352 SLC14A2Q15849 920 aa15.07■□□□□ 0
NUP54-213ENST00000513352 PIP5KL1Q5T9C9 394 aa15.07■□□□□ 0
NUP54-213ENST00000513352 ERAP2Q6P179 960 aa15.07■□□□□ 0
NUP54-213ENST00000513352 KDELC1Q6UW63 502 aa15.07■□□□□ 0
NUP54-213ENST00000513352 NDUFAF2Q8N183 169 aa15.07■□□□□ 0
NUP54-213ENST00000513352 SLC25A41Q8N5S1 370 aa15.07■□□□□ 0
NUP54-213ENST00000513352 FRMD1Q8N878 549 aa15.07■□□□□ 0
NUP54-213ENST00000513352 VOPP1Q96AW1 172 aa15.07■□□□□ 0
NUP54-213ENST00000513352 ECHDC3Q96DC8 303 aa15.07■□□□□ 0
NUP54-213ENST00000513352 PRRX2Q99811 253 aa15.07■□□□□ 0
NUP54-213ENST00000513352 GORASP1Q9BQQ3 440 aa15.07■□□□□ 0
NUP54-213ENST00000513352 MLPHQ9BV36 600 aaPredicted RBP15.07■□□□□ 0
NUP54-213ENST00000513352 ADGRE3Q9BY15 652 aa15.07■□□□□ 0
NUP54-213ENST00000513352 ETNK1Q9HBU6 452 aa15.07■□□□□ 0
NUP54-213ENST00000513352 VPS45Q9NRW7 570 aa15.07■□□□□ 0
NUP54-213ENST00000513352 PCYOX1Q9UHG3 505 aa15.07■□□□□ 0
NUP54-213ENST00000513352 ITM2BQ9Y287 266 aa15.07■□□□□ 0
NUP54-213ENST00000513352 PLXND1Q9Y4D7 1925 aa15.07■□□□□ 0
NUP54-213ENST00000513352 TBC1D3DA0A087WVF3 549 aa15.06■□□□□ 0
NUP54-213ENST00000513352 TBC1D3IA0A087WXS9 549 aa15.06■□□□□ 0
NUP54-213ENST00000513352 TBC1D3EA0A087X179 549 aa15.06■□□□□ 0
NUP54-213ENST00000513352 TBC1D3KA0A087X1G2 549 aa15.06■□□□□ 0
NUP54-213ENST00000513352 TSPAN11A1L157 253 aa15.06■□□□□ 0
NUP54-213ENST00000513352 CTAGE15A4D2H0 777 aa15.06■□□□□ 0
NUP54-213ENST00000513352 TBC1D3FA6NER0 549 aaPredicted RBP15.06■□□□□ 0
NUP54-213ENST00000513352 LRRC72A6NJI9 287 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms