RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 EID2Q8N6I1 236 aa11.31□□□□□ -0.6
RFFL-204ENST00000414419 PNPLA1Q8N8W4 532 aa11.31□□□□□ -0.6
RFFL-204ENST00000414419 TC2NQ8N9U0 490 aa11.31□□□□□ -0.6
RFFL-204ENST00000414419 DENND6BQ8NEG7 585 aa11.31□□□□□ -0.6
RFFL-204ENST00000414419 FAM71BQ8TC56 605 aa11.31□□□□□ -0.6
RFFL-204ENST00000414419 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.31□□□□□ -0.6
RFFL-204ENST00000414419 ASB12Q8WXK4 309 aa11.31□□□□□ -0.6
RFFL-204ENST00000414419 CNTNAP3BQ96NU0 1288 aa11.31□□□□□ -0.6
RFFL-204ENST00000414419 ZNF670Q9BS34 389 aa11.31□□□□□ -0.6
RFFL-204ENST00000414419 WRAP53Q9BUR4 548 aaKnown RBP11.31□□□□□ -0.6
RFFL-204ENST00000414419 SCNM1Q9BWG6 230 aa11.31□□□□□ -0.6
RFFL-204ENST00000414419 MAK16Q9BXY0 300 aaKnown RBP11.31□□□□□ -0.6
RFFL-204ENST00000414419 CNTNAP3Q9BZ76 1288 aa11.31□□□□□ -0.6
RFFL-204ENST00000414419 RBSNQ9H1K0 784 aa11.31□□□□□ -0.6
RFFL-204ENST00000414419 SCUBE2Q9NQ36 999 aa11.31□□□□□ -0.6
RFFL-204ENST00000414419 KLHL11Q9NVR0 708 aa11.31□□□□□ -0.6
RFFL-204ENST00000414419 HAUS2Q9NVX0 235 aa11.31□□□□□ -0.6
RFFL-204ENST00000414419 ACACBO00763 2458 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 A0A1W2PQ67 120 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 TSPAN11A1L157 253 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 LRRD1A4D1F6 860 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 POM121BA6NF01 834 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 HYAL3O43820 417 aaPredicted RBP11.3□□□□□ -0.6
RFFL-204ENST00000414419 LZTS3O60299 673 aaPredicted RBP11.3□□□□□ -0.6
RFFL-204ENST00000414419 LDOC1O95751 146 aaPredicted RBP11.3□□□□□ -0.6
RFFL-204ENST00000414419 TNNT1P13805 278 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 ITIH2P19823 946 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 SPINK2P20155 84 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 MX2P20592 715 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 KDELR1P24390 212 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 CYLC1P35663 651 aaPredicted RBP11.3□□□□□ -0.6
RFFL-204ENST00000414419 SLC1A1P43005 524 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 MAGEA1P43355 309 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 MMP13P45452 471 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 RGRP47804 291 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 ARSEP51690 589 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 ZNF75DP51815 510 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 THOP1P52888 689 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 ITKQ08881 620 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 PDE1CQ14123 709 aaPredicted RBP11.3□□□□□ -0.6
RFFL-204ENST00000414419 PTK2BQ14289 1009 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 PAFAH1B3Q15102 231 aaKnown RBP11.3□□□□□ -0.6
RFFL-204ENST00000414419 SHBQ15464 509 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 IFI16Q16666 785 aaKnown RBP11.3□□□□□ -0.6
RFFL-204ENST00000414419 TMEM52BQ4KMG9 183 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 CCDC157Q569K6 752 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 NCBP2-AS2Q69YL0 99 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 TIGD7Q6NT04 549 aaPredicted RBP11.3□□□□□ -0.6
RFFL-204ENST00000414419 KYAT3Q6YP21 454 aaKnown RBP11.3□□□□□ -0.6
RFFL-204ENST00000414419 CPNE8Q86YQ8 564 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 CCDC170Q8IYT3 715 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 CHCHD4Q8N4Q1 142 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 PCDH19Q8TAB3 1148 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 BAHD1Q8TBE0 780 aaPredicted RBP11.3□□□□□ -0.6
RFFL-204ENST00000414419 PDCD6IPQ8WUM4 868 aaKnown RBP11.3□□□□□ -0.6
RFFL-204ENST00000414419 ADAMTS14Q8WXS8 1223 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 VOPP1Q96AW1 172 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 IFT43Q96FT9 208 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 MRFAP1L1Q96HT8 127 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 CNDP2Q96KP4 475 aaKnown RBP11.3□□□□□ -0.6
RFFL-204ENST00000414419 BMFQ96LC9 184 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 ZNF830Q96NB3 372 aaPredicted RBP11.3□□□□□ -0.6
RFFL-204ENST00000414419 PCDH12Q9NPG4 1184 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 DNAJC28Q9NX36 388 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 ATP8A1Q9Y2Q0 1164 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 PTPRBP23467 1997 aa11.3□□□□□ -0.6
RFFL-204ENST00000414419 COL5A1P20908 1838 aaPredicted RBP11.3□□□□□ -0.6
RFFL-204ENST00000414419 KNTC1P50748 2209 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 NEMP2A6NFY4 417 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 H3BM21 787 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 TOR1BO14657 336 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 ENC1O14682 589 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 RIOK3O14730 519 aaKnown RBP11.29□□□□□ -0.6
RFFL-204ENST00000414419 MUSKO15146 869 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 RAD51BO15315 384 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 SPINT1O43278 529 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 SPOPO43791 374 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 MFSD11O43934 449 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 SDC3O75056 442 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 MTA2O94776 668 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 IPO7O95373 1038 aaKnown RBP11.29□□□□□ -0.6
RFFL-204ENST00000414419 TOP3BO95985 862 aaKnown RBP11.29□□□□□ -0.6
RFFL-204ENST00000414419 ATXN1LP0C7T5 689 aaKnown RBP11.29□□□□□ -0.6
RFFL-204ENST00000414419 GARSP41250 739 aaKnown RBP11.29□□□□□ -0.6
RFFL-204ENST00000414419 HNRNPKP61978 463 aaKnown RBP eCLIP11.29□□□□□ -0.61e-7■■□□□ 14.5
RFFL-204ENST00000414419 GALNT2Q10471 571 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 LRRC14Q15048 493 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 RALGPS1Q5JS13 557 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 SLCO6A1Q86UG4 719 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 PARGQ86W56 976 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 RHOT1Q8IXI2 618 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 SLC22A18ASQ8N1D0 253 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 CCNYQ8ND76 341 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 CENPTQ96BT3 561 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 NUDCD1Q96RS6 583 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 KLF6Q99612 283 aaPredicted RBP11.29□□□□□ -0.6
RFFL-204ENST00000414419 MGME1Q9BQP7 344 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 NT5MQ9NPB1 228 aa11.29□□□□□ -0.6
RFFL-204ENST00000414419 DDX56Q9NY93 547 aaKnown RBP11.29□□□□□ -0.6
RFFL-204ENST00000414419 NEUROG3Q9Y4Z2 214 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms