RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 NLGN4YQ8NFZ3 816 aaPredicted RBP14.06□□□□□ -0.16
NKX3-1-202ENST00000523261 USP28Q96RU2 1077 aa14.06□□□□□ -0.16
NKX3-1-202ENST00000523261 RBM15Q96T37 977 aaKnown RBP eCLIP14.06□□□□□ -0.16
NKX3-1-202ENST00000523261 ZSWIM1Q9BR11 485 aa14.06□□□□□ -0.16
NKX3-1-202ENST00000523261 SLC39A1Q9NY26 324 aa14.06□□□□□ -0.16
NKX3-1-202ENST00000523261 SLC12A6Q9UHW9 1150 aa14.06□□□□□ -0.16
NKX3-1-202ENST00000523261 KIAA1257Q9ULG3 409 aa14.06□□□□□ -0.16
NKX3-1-202ENST00000523261 VANGL2Q9ULK5 521 aa14.06□□□□□ -0.16
NKX3-1-202ENST00000523261 C16orf96A6NNT2 1141 aa14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 KRT13P13646 458 aa14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 MAP4P27816 1152 aaKnown RBP14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 GTF2H1P32780 548 aa14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 CCNHP51946 323 aaPredicted RBP14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 OR1D5P58170 312 aa14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 SRP54P61011 504 aaKnown RBP14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 MRPL49Q13405 166 aaKnown RBP14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 CUL2Q13617 745 aa14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 EDRF1Q3B7T1 1238 aa14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 AMZ1Q400G9 498 aa14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 KCTD16Q68DU8 428 aa14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 FAM186BQ8IYM0 893 aa14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 UBR7Q8N806 425 aa14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 DCAF4L2Q8NA75 395 aa14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 AGBL5Q8NDL9 886 aa14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 FAM46DQ8NEK8 389 aa14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 MAGEF1Q9HAY2 307 aa14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 CHD5Q8TDI0 1954 aa14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 ARHGEF17Q96PE2 2063 aaPredicted RBP14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 CSMD2Q7Z408 3487 aa14.05□□□□□ -0.16
NKX3-1-202ENST00000523261 FBN3Q75N90 2809 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 TCP11X1B4DZS4 312 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 M0QYV0 167 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 AREL1O15033 823 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 SART1O43290 800 aaKnown RBP14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 KLRC4O43908 158 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 GGCXP38435 758 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 MXI1P50539 228 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 COPB1P53618 953 aaKnown RBP14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 LIMK2P53671 638 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 CDH4P55283 916 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 MCCD1P59942 119 aaPredicted RBP14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 ABHD18Q0P651 414 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 TRA2AQ13595 282 aaKnown RBP eCLIP14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 CNGA2Q16280 664 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 CLPPQ16740 277 aaPredicted RBP14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 DCAF12Q5T6F0 453 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 ANKS6Q68DC2 871 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 ENPP7Q6UWV6 458 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 TIPARPQ7Z3E1 657 aaKnown RBP14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 SLC34A3Q8N130 599 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 PRR7Q8TB68 274 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 PDCD6IPQ8WUM4 868 aaKnown RBP14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 C1QTNF7Q9BXJ2 289 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 INTS2Q9H0H0 1204 aaKnown RBP14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 ZSCAN16Q9H4T2 348 aaPredicted RBP14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 OCIAD1Q9NX40 245 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 TLK1Q9UKI8 766 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 TRAF3IP3Q9Y228 551 aa14.04□□□□□ -0.16
NKX3-1-202ENST00000523261 A0A0D9SEW6 157 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 TMEM110-MUSTN1A8MSY1 372 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 B4DGG1 531 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 B4E171 279 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 MMP20O60882 483 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 RFPL1O75677 317 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 TM7SF2O76062 418 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 SORBS2O94875 1100 aaKnown RBP14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 RHOCP08134 193 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 SLC2A3P11169 496 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 NR2F2P24468 414 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 CD1CP29017 333 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 CSTF2P33240 577 aaKnown RBP eCLIP14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 TSPAN7P41732 249 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 RPL34P49207 117 aaKnown RBP14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 NFATC4Q14934 902 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 IRF4Q15306 451 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 C5orf22Q49AR2 442 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 CARD16Q5EG05 197 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 ZNF438Q7Z4V0 828 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 TAF8Q7Z7C8 310 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 PCDH20Q8N6Y1 951 aaKnown RBP14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 ARHGEF26Q96DR7 871 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 PDXPQ96GD0 296 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 TRIM62Q9BVG3 475 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 CEP44Q9C0F1 390 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 ZDHHC6Q9H6R6 413 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 CYP4F12Q9HCS2 524 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 KLQ9UEF7 1012 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 DGKBQ9Y6T7 804 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 TNRC6AQ8NDV7 1962 aaKnown RBP14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 MED13LQ71F56 2210 aa14.03□□□□□ -0.16
NKX3-1-202ENST00000523261 NAV3Q8IVL0 2385 aa14.02□□□□□ -0.16
NKX3-1-202ENST00000523261 CALUO43852 315 aaPredicted RBP14.02□□□□□ -0.17
NKX3-1-202ENST00000523261 PAEPP09466 180 aa14.02□□□□□ -0.17
NKX3-1-202ENST00000523261 HTR1BP28222 390 aa14.02□□□□□ -0.17
NKX3-1-202ENST00000523261 ALDH4A1P30038 563 aa14.02□□□□□ -0.17
NKX3-1-202ENST00000523261 CCR1P32246 355 aa14.02□□□□□ -0.17
NKX3-1-202ENST00000523261 SERPINH1P50454 418 aaKnown RBP14.02□□□□□ -0.17
NKX3-1-202ENST00000523261 DNA2P51530 1060 aa14.02□□□□□ -0.17
NKX3-1-202ENST00000523261 RAB15P59190 212 aa14.02□□□□□ -0.17
NKX3-1-202ENST00000523261 YWHAEP62258 255 aaKnown RBP14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms