RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 TWIST1Q15672 202 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 EDRF1Q3B7T1 1238 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 NEK10Q6ZWH5 1172 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 MRPL10Q7Z7H8 261 aaKnown RBP4.69□□□□□ -1.66
CCDC54-201ENST00000261058 RBFAQ8N0V3 343 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 TEX45Q8NA69 505 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 ENGASEQ8NFI3 743 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 TMEM163Q8TC26 289 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 ATOH1Q92858 354 aaPredicted RBP4.69□□□□□ -1.66
CCDC54-201ENST00000261058 SNAPC3Q92966 411 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 SAAL1Q96ER3 474 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 HEMGNQ9BXL5 484 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 SPRTNQ9H040 489 aaPredicted RBP4.69□□□□□ -1.66
CCDC54-201ENST00000261058 MVB12BQ9H7P6 319 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 FZD3Q9NPG1 666 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 SPATS2LQ9NUQ6 558 aaKnown RBP4.69□□□□□ -1.66
CCDC54-201ENST00000261058 SWAP70Q9UH65 585 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 COG5Q9UP83 839 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 RAP2CQ9Y3L5 183 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 HS3ST3B1Q9Y662 390 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 WDR91A4D1P6 747 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 NDUFB8O95169 186 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 ENO3P13929 434 aaPredicted RBP4.68□□□□□ -1.66
CCDC54-201ENST00000261058 CHRNB2P17787 502 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 CHMP24386 653 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 ABCG1P45844 678 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 HARS2P49590 506 aaKnown RBP4.68□□□□□ -1.66
CCDC54-201ENST00000261058 EIF3BP55884 814 aaKnown RBP4.68□□□□□ -1.66
CCDC54-201ENST00000261058 CLDN2P57739 230 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 MRPS21P82921 87 aaKnown RBP4.68□□□□□ -1.66
CCDC54-201ENST00000261058 GAD2Q05329 585 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 FOXD4Q12950 439 aaPredicted RBP4.68□□□□□ -1.66
CCDC54-201ENST00000261058 ERV3-1Q14264 604 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 RNPS1Q15287 305 aaKnown RBP4.68□□□□□ -1.66
CCDC54-201ENST00000261058 TBCEQ15813 527 aaPredicted RBP4.68□□□□□ -1.66
CCDC54-201ENST00000261058 ETFDHQ16134 617 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 PLEKHO1Q53GL0 409 aaPredicted RBP4.68□□□□□ -1.66
CCDC54-201ENST00000261058 ATF7IPQ6VMQ6 1270 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 PCGF5Q86SE9 256 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 FAM217AQ8IXS0 508 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 HORMAD2Q8N7B1 307 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 NANOGP1Q8N7R0 232 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 DENND1AQ8TEH3 1009 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 UCMAQ8WVF2 138 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 INPP5DQ92835 1189 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 KIF1BPQ96EK5 621 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 PLEKHA4Q9H4M7 779 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 DECR2Q9NUI1 292 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 BABAM1Q9NWV8 329 aa4.68□□□□□ -1.66
CCDC54-201ENST00000261058 ORC3Q9UBD5 711 aaPredicted RBP4.68□□□□□ -1.66
CCDC54-201ENST00000261058 A0A0U1RQF3 1178 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 TMEM272A0A1B0GTI8 110 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 PPEF2O14830 753 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 SEC14L2O76054 403 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 HSP90AA1P07900 732 aaKnown RBP4.67□□□□□ -1.66
CCDC54-201ENST00000261058 LAMP2P13473 410 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 SRD5A1P18405 259 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 EDN2P20800 178 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 GNLYP22749 145 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 BSGP35613 385 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 GABRB2P47870 512 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 ME1P48163 572 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 SELENOVP59797 346 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 RPL7AP62424 266 aaKnown RBP4.67□□□□□ -1.66
CCDC54-201ENST00000261058 FAM27E3Q08E93 113 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 TAF11Q15544 211 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 EPHA10Q5JZY3 1008 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 PXDC1Q5TGL8 231 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 WDR78Q5VTH9 848 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 NUGGCQ68CJ6 796 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 PARM1Q6UWI2 310 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 CAMK1DQ8IU85 385 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 ADSSL1Q8N142 457 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 ANKRD52Q8NB46 1076 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 ZNF548Q8NEK5 533 aaPredicted RBP4.67□□□□□ -1.66
CCDC54-201ENST00000261058 RASSF8Q8NHQ8 419 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 CEP76Q8TAP6 659 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 RNF183Q96D59 192 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 RANBP17Q9H2T7 1088 aaKnown RBP4.67□□□□□ -1.66
CCDC54-201ENST00000261058 RPS6KL1Q9Y6S9 549 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 CLSPNQ9HAW4 1339 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 CACNA1IQ9P0X4 2223 aa4.67□□□□□ -1.66
CCDC54-201ENST00000261058 STMND1H3BQB6 276 aa4.66□□□□□ -1.66
CCDC54-201ENST00000261058 SCGB1D1O95968 90 aa4.66□□□□□ -1.66
CCDC54-201ENST00000261058 HOXB5P09067 269 aa4.66□□□□□ -1.66
CCDC54-201ENST00000261058 SLC2A4P14672 509 aa4.66□□□□□ -1.66
CCDC54-201ENST00000261058 ZNF8P17098 575 aaPredicted RBP4.66□□□□□ -1.66
CCDC54-201ENST00000261058 TBXAS1P24557 533 aaPredicted RBP4.66□□□□□ -1.66
CCDC54-201ENST00000261058 AVPR1AP37288 418 aa4.66□□□□□ -1.66
CCDC54-201ENST00000261058 PPP3CCP48454 512 aa4.66□□□□□ -1.66
CCDC54-201ENST00000261058 KRT32Q14532 448 aa4.66□□□□□ -1.66
CCDC54-201ENST00000261058 SNX30Q5VWJ9 437 aa4.66□□□□□ -1.66
CCDC54-201ENST00000261058 HEPHL1Q6MZM0 1159 aa4.66□□□□□ -1.66
CCDC54-201ENST00000261058 TRAPPC11Q7Z392 1133 aa4.66□□□□□ -1.66
CCDC54-201ENST00000261058 SLC46A3Q7Z3Q1 461 aa4.66□□□□□ -1.66
CCDC54-201ENST00000261058 PXKQ7Z7A4 578 aa4.66□□□□□ -1.66
CCDC54-201ENST00000261058 TBC1D26Q86UD7 250 aa4.66□□□□□ -1.66
CCDC54-201ENST00000261058 GPAT4Q86UL3 456 aa4.66□□□□□ -1.66
CCDC54-201ENST00000261058 DENND6AQ8IWF6 608 aa4.66□□□□□ -1.66
CCDC54-201ENST00000261058 GABPB2Q8TAK5 448 aaPredicted RBP4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms