RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 ZFHX2Q9C0A1 2572 aaPredicted RBP26.16■■□□□ 1.78
TRIM28-204ENST00000594806 BCLAF3A2AJT9 711 aaKnown RBP26.15■■□□□ 1.78
TRIM28-204ENST00000594806 LRRC72A6NJI9 287 aa26.15■■□□□ 1.78
TRIM28-204ENST00000594806 METTL12A8MUP2 240 aa26.15■■□□□ 1.78
TRIM28-204ENST00000594806 MIF4GDA9UHW6 222 aaKnown RBP26.15■■□□□ 1.78
TRIM28-204ENST00000594806 KPNA3O00505 521 aaPredicted RBP26.15■■□□□ 1.78
TRIM28-204ENST00000594806 FOXD2O60548 495 aaPredicted RBP26.15■■□□□ 1.78
TRIM28-204ENST00000594806 CCNCP24863 283 aa26.15■■□□□ 1.78
TRIM28-204ENST00000594806 LBRQ14739 615 aaKnown RBP26.15■■□□□ 1.78
TRIM28-204ENST00000594806 TFDP3Q5H9I0 405 aa26.15■■□□□ 1.78
TRIM28-204ENST00000594806 WDR45BQ5MNZ6 344 aa26.15■■□□□ 1.78
TRIM28-204ENST00000594806 SPOCD1Q6ZMY3 1216 aa26.15■■□□□ 1.78
TRIM28-204ENST00000594806 PEX26Q7Z412 305 aa26.15■■□□□ 1.78
TRIM28-204ENST00000594806 CYP2U1Q7Z449 544 aa26.15■■□□□ 1.78
TRIM28-204ENST00000594806 NT5DC3Q86UY8 548 aa26.15■■□□□ 1.78
TRIM28-204ENST00000594806 RFX6Q8HWS3 928 aa26.15■■□□□ 1.78
TRIM28-204ENST00000594806 PLD5Q8N7P1 536 aa26.15■■□□□ 1.78
TRIM28-204ENST00000594806 NETO2Q8NC67 525 aa26.15■■□□□ 1.78
TRIM28-204ENST00000594806 PDLIM2Q96JY6 352 aa26.15■■□□□ 1.78
TRIM28-204ENST00000594806 PSKH2Q96QS6 385 aa26.15■■□□□ 1.78
TRIM28-204ENST00000594806 HINFPQ9BQA5 517 aa26.15■■□□□ 1.78
TRIM28-204ENST00000594806 ZDHHC6Q9H6R6 413 aa26.15■■□□□ 1.78
TRIM28-204ENST00000594806 TNRC6BQ9UPQ9 1833 aaKnown RBP26.15■■□□□ 1.78
TRIM28-204ENST00000594806 ITGB7P26010 798 aa26.14■■□□□ 1.78
TRIM28-204ENST00000594806 CETN2P41208 172 aa26.14■■□□□ 1.78
TRIM28-204ENST00000594806 NR2C2P49116 596 aa26.14■■□□□ 1.78
TRIM28-204ENST00000594806 RWDD2BP57060 319 aa26.14■■□□□ 1.78
TRIM28-204ENST00000594806 HNRNPDQ14103 355 aaKnown RBP26.14■■□□□ 1.78
TRIM28-204ENST00000594806 PPP2R5EQ16537 467 aa26.14■■□□□ 1.78
TRIM28-204ENST00000594806 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP26.14■■□□□ 1.78
TRIM28-204ENST00000594806 OR2T34Q8NGX1 318 aa26.14■■□□□ 1.78
TRIM28-204ENST00000594806 GRIN3AQ8TCU5 1115 aa26.14■■□□□ 1.78
TRIM28-204ENST00000594806 KRT35Q92764 455 aa26.14■■□□□ 1.78
TRIM28-204ENST00000594806 HDAC11Q96DB2 347 aa26.14■■□□□ 1.78
TRIM28-204ENST00000594806 BRD8Q9H0E9 1235 aa26.14■■□□□ 1.78
TRIM28-204ENST00000594806 HAUS2Q9NVX0 235 aa26.14■■□□□ 1.78
TRIM28-204ENST00000594806 DTLQ9NZJ0 730 aa26.14■■□□□ 1.78
TRIM28-204ENST00000594806 SERGEFQ9UGK8 458 aa26.14■■□□□ 1.78
TRIM28-204ENST00000594806 EFR3BQ9Y2G0 817 aa26.14■■□□□ 1.78
TRIM28-204ENST00000594806 VPS13AQ96RL7 3174 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 EP300Q09472 2414 aaPredicted RBP26.13■■□□□ 1.77
TRIM28-204ENST00000594806 PTPRZ1P23471 2315 aaPredicted RBP26.13■■□□□ 1.77
TRIM28-204ENST00000594806 A0A0U1RQJ8 604 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 KRIT1O00522 736 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 PEX11BO96011 259 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 PTGER3P43115 390 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 MAPK8P45983 427 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 CREB5Q02930 508 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 GBE1Q04446 702 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 CNTN1Q12860 1018 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 ATXN7L2Q5T6C5 722 aaPredicted RBP26.13■■□□□ 1.77
TRIM28-204ENST00000594806 MARC1Q5VT66 337 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 ERN2Q76MJ5 926 aaKnown RBP26.13■■□□□ 1.77
TRIM28-204ENST00000594806 RABEPKQ7Z6M1 372 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 ALYREFQ86V81 257 aaKnown RBP26.13■■□□□ 1.77
TRIM28-204ENST00000594806 SYT12Q8IV01 421 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 SLC41A1Q8IVJ1 513 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 UBL4BQ8N7F7 174 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 HCAR2Q8TDS4 363 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 HSPA12BQ96MM6 686 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 TUBGCP5Q96RT8 1024 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 ARRDC1-AS1Q9H2J1 176 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 AMACRQ9UHK6 382 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 GUCA1BQ9UMX6 200 aa26.13■■□□□ 1.77
TRIM28-204ENST00000594806 PTMAP06454 111 aaKnown RBP26.12■■□□□ 1.77
TRIM28-204ENST00000594806 TGM2P21980 687 aa26.12■■□□□ 1.77
TRIM28-204ENST00000594806 MPLP40238 635 aa26.12■■□□□ 1.77
TRIM28-204ENST00000594806 ADPRHP54922 357 aa26.12■■□□□ 1.77
TRIM28-204ENST00000594806 SLC10A7Q0GE19 358 aa26.12■■□□□ 1.77
TRIM28-204ENST00000594806 ZNF235Q14590 738 aa26.12■■□□□ 1.77
TRIM28-204ENST00000594806 PDK1Q15118 436 aa26.12■■□□□ 1.77
TRIM28-204ENST00000594806 ZNF805Q5CZA5 627 aa26.12■■□□□ 1.77
TRIM28-204ENST00000594806 RALGPS1Q5JS13 557 aa26.12■■□□□ 1.77
TRIM28-204ENST00000594806 AGBL4Q5VU57 503 aa26.12■■□□□ 1.77
TRIM28-204ENST00000594806 PEAR1Q5VY43 1037 aaPredicted RBP26.12■■□□□ 1.77
TRIM28-204ENST00000594806 CCDC50Q8IVM0 306 aa26.12■■□□□ 1.77
TRIM28-204ENST00000594806 OR14C36Q8NHC7 312 aa26.12■■□□□ 1.77
TRIM28-204ENST00000594806 DNASE2BQ8WZ79 361 aa26.12■■□□□ 1.77
TRIM28-204ENST00000594806 VPS45Q9NRW7 570 aa26.12■■□□□ 1.77
TRIM28-204ENST00000594806 EVLQ9UI08 416 aaPredicted RBP26.12■■□□□ 1.77
TRIM28-204ENST00000594806 PI4KAP42356 2102 aa26.11■■□□□ 1.77
TRIM28-204ENST00000594806 MEI4A8MW99 385 aa26.11■■□□□ 1.77
TRIM28-204ENST00000594806 MATN3O15232 486 aa26.11■■□□□ 1.77
TRIM28-204ENST00000594806 PLRG1O43660 514 aaKnown RBP26.11■■□□□ 1.77
TRIM28-204ENST00000594806 MARCKSL1P49006 195 aa26.11■■□□□ 1.77
TRIM28-204ENST00000594806 PEX5P50542 639 aa26.11■■□□□ 1.77
TRIM28-204ENST00000594806 NEK3P51956 506 aa26.11■■□□□ 1.77
TRIM28-204ENST00000594806 SLC10A2Q12908 348 aaPredicted RBP26.11■■□□□ 1.77
TRIM28-204ENST00000594806 PLA2G2CQ5R387 149 aa26.11■■□□□ 1.77
TRIM28-204ENST00000594806 NEK5Q6P3R8 708 aa26.11■■□□□ 1.77
TRIM28-204ENST00000594806 GDPD4Q6W3E5 623 aa26.11■■□□□ 1.77
TRIM28-204ENST00000594806 SRLQ86TD4 932 aa26.11■■□□□ 1.77
TRIM28-204ENST00000594806 TEX26Q8N6G2 289 aa26.11■■□□□ 1.77
TRIM28-204ENST00000594806 TSEN2Q8NCE0 465 aaKnown RBP26.11■■□□□ 1.77
TRIM28-204ENST00000594806 MAML1Q92585 1016 aa26.11■■□□□ 1.77
TRIM28-204ENST00000594806 RAB7BQ96AH8 199 aa26.11■■□□□ 1.77
TRIM28-204ENST00000594806 ARRDC3Q96B67 414 aa26.11■■□□□ 1.77
TRIM28-204ENST00000594806 ZNF641Q96N77 438 aaPredicted RBP26.11■■□□□ 1.77
TRIM28-204ENST00000594806 DKK3Q9UBP4 350 aa26.11■■□□□ 1.77
TRIM28-204ENST00000594806 SUSD2Q9UGT4 822 aa26.11■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms