RNA–Protein interactions for RNA: ENST00000558868.5

TPM1-215, Transcript of tropomyosin 1, human

TSL 2

Gene TPM1, Length 653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-215	ENST00000558868	DSC2	Q02487	901 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	NIPAL4	Q0D2K0	466 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	DNAJC3	Q13217	504 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	SLC12A1	Q13621	1099 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	INO80D	Q53TQ3	878 aa	Predicted RBP	13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	PRSS36	Q5K4E3	855 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	PKN3	Q6P5Z2	889 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868		Q7L0L9	218 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	METTL3	Q86U44	580 aa	Known RBP	13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	MFN1	Q8IWA4	741 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	BBS7	Q8IWZ6	715 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	KIAA1958	Q8N8K9	716 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	DCAF4L2	Q8NA75	395 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	GABPB2	Q8TAK5	448 aa	Predicted RBP	13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	ARRDC2	Q8TBH0	407 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	PPP2R3C	Q969Q6	453 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	ZNF669	Q96BR6	464 aa	Predicted RBP	13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	IFT43	Q96FT9	208 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	CERS2	Q96G23	380 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	SGSM3	Q96HU1	749 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	FEM1C	Q96JP0	617 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	RANBP9	Q96S59	729 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	SEMA3C	Q99985	751 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	MGME1	Q9BQP7	344 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	C2orf49	Q9BVC5	232 aa	Predicted RBP	13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	PRO3102	Q9H379	93 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	TDP1	Q9NUW8	608 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	DZANK1	Q9NVP4	752 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	PIH1D1	Q9NWS0	290 aa	Known RBP	13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	KIAA1522	Q9P206	1035 aa	Predicted RBP	13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	TXNDC16	Q9P2K2	825 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	VPS28	Q9UK41	221 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	YBX2	Q9Y2T7	364 aa	Known RBP	13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	HCFC2	Q9Y5Z7	792 aa		13.97	□□□□□ -0.17
TPM1-215	ENST00000558868	CACNA1A	O00555	2505 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	FAM47DP	A6NHR8	397 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	CBX4	O00257	560 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	SLC9A3R1	O14745	358 aa	Predicted RBP	13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	PER2	O15055	1255 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	MOSPD3	O75425	235 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	FAM155B	O75949	473 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	PAPLN	O95428	1278 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	MMP2	P08253	660 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	TPH1	P17752	444 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	HLA-DPA1	P20036	260 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	LSP1	P33241	339 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	SERPINH1	P50454	418 aa	Known RBP	13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	MAX	P61244	160 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	OLIG2	Q13516	323 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	PCSK7	Q16549	785 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	DUSP6	Q16828	381 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	RALGPS1	Q5JS13	557 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	STXBP5	Q5T5C0	1151 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	PDPK2P	Q6A1A2	396 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	DENND5A	Q6IQ26	1287 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	RETSAT	Q6NUM9	610 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	TRMT10B	Q6PF06	316 aa	Known RBP	13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	NLRP9	Q7RTR0	991 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	SPRED2	Q7Z698	418 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	GRASP	Q7Z6J2	395 aa	Predicted RBP	13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	RASSF3	Q86WH2	238 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	PGBD5	Q8N414	524 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	TTC16	Q8NEE8	873 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	OR52K2	Q8NGK3	314 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	FIBIN	Q8TAL6	211 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	ACD	Q96AP0	544 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	OTUB2	Q96DC9	234 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	TCEAL4	Q96EI5	215 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	CPNE1	Q99829	537 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	FEM1A	Q9BSK4	669 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	KIF9	Q9HAQ2	790 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	ZFAT	Q9P243	1243 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	PRKAG3	Q9UGI9	489 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	TCAF1	Q9Y4C2	921 aa		13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	ARIH1	Q9Y4X5	557 aa	Predicted RBP	13.96	□□□□□ -0.17
TPM1-215	ENST00000558868	MUC3A	Q02505	3323 aa		13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	LOC285095	A0A1B0GVY8	99 aa		13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	HEATR9	A2RTY3	570 aa		13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	CXorf49	A8MYA2	514 aa	Predicted RBP	13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	INSIG1	O15503	277 aa		13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	FGF1	P05230	155 aa		13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	CA4	P22748	312 aa		13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	WEE1	P30291	646 aa		13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	CDK18	Q07002	472 aa		13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	SLC20A2	Q08357	652 aa		13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	NSUN2	Q08J23	767 aa	Known RBP eCLIP	13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	SLC1A5	Q15758	541 aa		13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	GRTP1	Q5TC63	336 aa		13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	FYB2	Q5VWT5	728 aa		13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	PPP2R2D	Q66LE6	453 aa		13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	RNF43	Q68DV7	783 aa		13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	RBM23	Q86U06	439 aa	Known RBP	13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	MDM1	Q8TC05	714 aa		13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	MZB1	Q8WU39	189 aa		13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	DYDC1	Q8WWB3	177 aa		13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	SMG7	Q92540	1137 aa	Known RBP	13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	USP13	Q92995	863 aa	Predicted RBP	13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	ZNF707	Q96C28	371 aa	Predicted RBP	13.95	□□□□□ -0.18
TPM1-215	ENST00000558868	NUDCD1	Q96RS6	583 aa		13.95	□□□□□ -0.18

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