RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 PTPN3P26045 913 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 GKP32189 559 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 CHRNA3P32297 505 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 RGRP47804 291 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 PXNP49023 591 aaPredicted RBP15.18■□□□□ 0.02
NUP54-213ENST00000513352 SCNN1BP51168 640 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 CSTF1Q05048 431 aaKnown RBP15.18■□□□□ 0.02
NUP54-213ENST00000513352 SIX1Q15475 284 aaPredicted RBP15.18■□□□□ 0.02
NUP54-213ENST00000513352 MYLK3Q32MK0 819 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 POM121L1PQ3SYA9 428 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 C1orf210Q8IVY1 113 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 PGBD5Q8N414 524 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 TEX26Q8N6G2 289 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 SLC35B2Q8TB61 432 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 GANCQ8TET4 914 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 PRCCQ92733 491 aaPredicted RBP15.18■□□□□ 0.02
NUP54-213ENST00000513352 FATE1Q969F0 183 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 PSKH2Q96QS6 385 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 HEPHQ9BQS7 1158 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 TMEM121Q9BTD3 319 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 POLR1EQ9GZS1 481 aaKnown RBP15.18■□□□□ 0.02
NUP54-213ENST00000513352 HOMER3Q9NSC5 361 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 IL36AQ9UHA7 158 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 CUL9Q8IWT3 2517 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 BCLAF3A2AJT9 711 aaKnown RBP15.17■□□□□ 0.02
NUP54-213ENST00000513352 CFAP69A5D8W1 941 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 C1QTNF3-AMACRE9PGA6 284 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 F5H423 210 aaPredicted RBP15.17■□□□□ 0.02
NUP54-213ENST00000513352 KPNA3O00505 521 aaPredicted RBP15.17■□□□□ 0.02
NUP54-213ENST00000513352 INSIG1O15503 277 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 ZNF189O75820 626 aaPredicted RBP15.17■□□□□ 0.02
NUP54-213ENST00000513352 POP4O95707 220 aaKnown RBP15.17■□□□□ 0.02
NUP54-213ENST00000513352 PRNPP04156 253 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 GABRG2P18507 467 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 NDUFV2P19404 249 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 DSC2Q02487 901 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 CCNG2Q16589 344 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 ARSIQ5FYB1 569 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 TSSK4Q6SA08 328 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 GSTA5Q7RTV2 222 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 PID1Q7Z2X4 250 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 SRLQ86TD4 932 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 TMPRSS6Q8IU80 811 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 FAM71DQ8N9W8 422 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 KIF18AQ8NI77 898 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 PIP4K2CQ8TBX8 421 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 MAGOHBQ96A72 148 aaKnown RBP15.17■□□□□ 0.02
NUP54-213ENST00000513352 SIPA1Q96FS4 1042 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 ZNF419Q96HQ0 510 aaPredicted RBP15.17■□□□□ 0.02
NUP54-213ENST00000513352 IL12RB2Q99665 862 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 SEMA3CQ99985 751 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 MGME1Q9BQP7 344 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 TPSD1Q9BZJ3 242 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 DYRK4Q9NR20 520 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 MUC3AQ02505 3323 aa15.17■□□□□ 0.02
NUP54-213ENST00000513352 ESPNB1AK53 854 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 ALOX15BO15296 676 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 LEFTY1O75610 366 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 GJB3O75712 270 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 PIGNO95427 931 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 IFNB1P01574 187 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 DNTTP04053 509 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 COPAP53621 1224 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 NRLP54845 237 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 RPS14P62263 151 aaKnown RBP15.16■□□□□ 0.02
NUP54-213ENST00000513352 WASHC5Q12768 1159 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 CST6Q15828 149 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 TEX44Q53QW1 395 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 CFAP58Q5T655 872 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 CREG2Q8IUH2 290 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 PLPP6Q8IY26 295 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 ZNF567Q8N184 647 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 PRELID2Q8N945 189 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 CCDC89Q8N998 374 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 MDGA1Q8NFP4 955 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 NKD2Q969F2 451 aaPredicted RBP15.16■□□□□ 0.02
NUP54-213ENST00000513352 MRGPRX1Q96LB2 322 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 NUDCD1Q96RS6 583 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 FAM129BQ96TA1 746 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 VAT1Q99536 393 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 MKRN2Q9H000 416 aaKnown RBP15.16■□□□□ 0.02
NUP54-213ENST00000513352 RSPH9Q9H1X1 276 aaPredicted RBP15.16■□□□□ 0.02
NUP54-213ENST00000513352 ATP13A3Q9H7F0 1226 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 PRMT8Q9NR22 394 aaPredicted RBP15.16■□□□□ 0.02
NUP54-213ENST00000513352 AMACRQ9UHK6 382 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 RSPH14Q9UHP6 348 aa15.16■□□□□ 0.02
NUP54-213ENST00000513352 K7ESF4 209 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 MID1O15344 667 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 PHF2O75151 1096 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 ADH1BP00325 375 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 UGT2B4P06133 528 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 CTSLP07711 333 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 NFKB1P19838 968 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 SLC8A1P32418 973 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 ACTN2P35609 894 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 MAPK8P45983 427 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 KCNJ1P48048 391 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 AP1S1P61966 158 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 BCL2L1Q07817 233 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 NSUN2Q08J23 767 aaKnown RBP eCLIP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms