RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 ASPHQ12797 758 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 EML3Q32P44 896 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 CES5AQ6NT32 575 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 DNAJC14Q6Y2X3 702 aaPredicted RBP8.82□□□□□ -1
LIMCH1-209ENST00000509277 BHLHA9Q7RTU4 235 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 ARID3BQ8IVW6 561 aaPredicted RBP8.82□□□□□ -1
LIMCH1-209ENST00000509277 CCDC117Q8IWD4 279 aaPredicted RBP8.82□□□□□ -1
LIMCH1-209ENST00000509277 CTAGE3PQ8IX95 158 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 KATNAL2Q8IYT4 538 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 ZSWIM3Q96MP5 696 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 SLC2A13Q96QE2 648 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 SLC46A2Q9BY10 475 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 MUC3BQ9H195 1237 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 SAYSD1Q9NPB0 183 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 FNIP2Q9P278 1114 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 FNDC3AQ9Y2H6 1198 aaKnown RBP8.82□□□□□ -1
LIMCH1-209ENST00000509277 PLXNA4Q9HCM2 1894 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 ZNF638Q14966 1978 aaKnown RBP8.81□□□□□ -1
LIMCH1-209ENST00000509277 SOX1O00570 391 aaPredicted RBP8.81□□□□□ -1
LIMCH1-209ENST00000509277 MFSD11O43934 449 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 GAS8O95995 478 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 ATP5DP30049 168 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 L1CAMP32004 1257 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 CDKN2BP42772 138 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 NAA20P61599 178 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 SLC34A1Q06495 639 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 TFDP2Q14188 446 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 GRM2Q14416 872 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 CARTPTQ16568 116 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 LIN52Q52LA3 116 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 OTUD1Q5VV17 481 aaPredicted RBP8.81□□□□□ -1
LIMCH1-209ENST00000509277 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.81□□□□□ -1
LIMCH1-209ENST00000509277 ZDHHC14Q8IZN3 488 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 RYBPQ8N488 228 aaPredicted RBP8.81□□□□□ -1
LIMCH1-209ENST00000509277 FNIP1Q8TF40 1166 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 IRGQQ8WZA9 623 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 CD101Q93033 1021 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 PRR11Q96HE9 360 aaPredicted RBP8.81□□□□□ -1
LIMCH1-209ENST00000509277 TRIM62Q9BVG3 475 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 WDR6Q9NNW5 1121 aaKnown RBP8.81□□□□□ -1
LIMCH1-209ENST00000509277 ANAPC5Q9UJX4 755 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 FZD10Q9ULW2 581 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 HS3ST4Q9Y661 456 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 TTC24A2A3L6 582 aaPredicted RBP8.81□□□□□ -1
LIMCH1-209ENST00000509277 KCNU1A8MYU2 1149 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 CFLARO15519 480 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 TBL1XO60907 577 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 ALFQ53S48 1182 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 LVRNQ6Q4G3 990 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 RNF148Q8N7C7 305 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 PRELID2Q8N945 189 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 PDZD8Q8NEN9 1154 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 SHKBP1Q8TBC3 707 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 ZSCAN18Q8TBC5 510 aaPredicted RBP8.81□□□□□ -1
LIMCH1-209ENST00000509277 EXOC2Q96KP1 924 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 RNF157Q96PX1 679 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 SPATA16Q9BXB7 569 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 EBF3Q9H4W6 596 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 PNPLA8Q9NP80 782 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 CYLDQ9NQC7 956 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 NDFIP2Q9NV92 336 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 PCDHGA4Q9Y5G9 962 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 E2F8A0AVK6 867 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 TYW5A2RUC4 315 aaKnown RBP8.81□□□□□ -1
LIMCH1-209ENST00000509277 E9PAM4 449 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 CBX4O00257 560 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 LILRB3O75022 631 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 DCTN3O75935 186 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 PRAMEF12O95522 483 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 ITGA2BP08514 1039 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 CLCN2P51788 898 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 ITIH3Q06033 890 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 CDH18Q13634 790 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 PIK3R6Q5UE93 754 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 BBS7Q8IWZ6 715 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 CCDC110Q8TBZ0 833 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 PDCD6IPQ8WUM4 868 aaKnown RBP8.81□□□□□ -1
LIMCH1-209ENST00000509277 DTNBP1Q96EV8 351 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 PRPF18Q99633 342 aaKnown RBP8.81□□□□□ -1
LIMCH1-209ENST00000509277 LINC00597Q9H2U6 94 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 SMOC2Q9H3U7 446 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 ARL8BQ9NVJ2 186 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 PRKAG3Q9UGI9 489 aa8.81□□□□□ -1
LIMCH1-209ENST00000509277 MYO16Q9Y6X6 1858 aa8.8□□□□□ -1
LIMCH1-209ENST00000509277 NEDD8-MDP1E9PL57 170 aa8.8□□□□□ -1
LIMCH1-209ENST00000509277 COQ9O75208 318 aa8.8□□□□□ -1
LIMCH1-209ENST00000509277 SEC24DO94855 1032 aaPredicted RBP8.8□□□□□ -1
LIMCH1-209ENST00000509277 PSMG1O95456 288 aa8.8□□□□□ -1
LIMCH1-209ENST00000509277 RBL1P28749 1068 aa8.8□□□□□ -1
LIMCH1-209ENST00000509277 ARSEP51690 589 aa8.8□□□□□ -1
LIMCH1-209ENST00000509277 ARFIP2P53365 341 aa8.8□□□□□ -1
LIMCH1-209ENST00000509277 HADHBP55084 474 aaKnown RBP8.8□□□□□ -1
LIMCH1-209ENST00000509277 UBE3AQ05086 875 aa8.8□□□□□ -1
LIMCH1-209ENST00000509277 GPS1Q13098 491 aa8.8□□□□□ -1
LIMCH1-209ENST00000509277 SPARCL1Q14515 664 aa8.8□□□□□ -1
LIMCH1-209ENST00000509277 FBXL22Q6P050 247 aa8.8□□□□□ -1
LIMCH1-209ENST00000509277 TTC27Q6P3X3 843 aa8.8□□□□□ -1
LIMCH1-209ENST00000509277 LILRA6Q6PI73 481 aa8.8□□□□□ -1
LIMCH1-209ENST00000509277 LINGO4Q6UY18 593 aa8.8□□□□□ -1
LIMCH1-209ENST00000509277 LRRC6Q86X45 466 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms