RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 DDX50Q9BQ39 737 aaKnown RBP22.98■■□□□ 1.27
CDX1-201ENST00000231656 LRRC40Q9H9A6 602 aa22.98■■□□□ 1.27
CDX1-201ENST00000231656 TDP1Q9NUW8 608 aa22.98■■□□□ 1.27
CDX1-201ENST00000231656 SH3BP1Q9Y3L3 701 aa22.98■■□□□ 1.27
CDX1-201ENST00000231656 EYSQ5T1H1 3165 aa22.98■■□□□ 1.27
CDX1-201ENST00000231656 HMX2A2RU54 273 aa22.97■■□□□ 1.27
CDX1-201ENST00000231656 SERPINB9P50453 376 aa22.97■■□□□ 1.27
CDX1-201ENST00000231656 PAPOLAP51003 745 aaKnown RBP22.97■■□□□ 1.27
CDX1-201ENST00000231656 ZKSCAN8Q15776 578 aaPredicted RBP22.97■■□□□ 1.27
CDX1-201ENST00000231656 SPANXN3Q5MJ09 141 aa22.97■■□□□ 1.27
CDX1-201ENST00000231656 LRRC49Q8IUZ0 686 aa22.97■■□□□ 1.27
CDX1-201ENST00000231656 CFAP52Q8N1V2 620 aa22.97■■□□□ 1.27
CDX1-201ENST00000231656 UMODL1-AS1Q8N2C9 162 aa22.97■■□□□ 1.27
CDX1-201ENST00000231656 SH3RF2Q8TEC5 729 aa22.97■■□□□ 1.27
CDX1-201ENST00000231656 USP13Q92995 863 aaPredicted RBP22.97■■□□□ 1.27
CDX1-201ENST00000231656 MTBPQ96DY7 904 aa22.97■■□□□ 1.27
CDX1-201ENST00000231656 SLC17A7Q9P2U7 560 aa22.97■■□□□ 1.27
CDX1-201ENST00000231656 ZNF212Q9UDV6 495 aa22.97■■□□□ 1.27
CDX1-201ENST00000231656 ZFP37Q9Y6Q3 630 aaPredicted RBP22.97■■□□□ 1.27
CDX1-201ENST00000231656 PSMD3O43242 534 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 RFPL1O75677 317 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 KRT38O76015 456 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 KIAA0754O94854 1291 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 ADRA1DP25100 572 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 CCNFP41002 786 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 NAB1Q13506 487 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 RABGAP1LQ5R372 815 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 TIGD7Q6NT04 549 aaPredicted RBP22.96■■□□□ 1.27
CDX1-201ENST00000231656 CGB2Q6NT52 195 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 FCRL5Q96RD9 977 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 GLOD4Q9HC38 313 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 DONSONQ9NYP3 566 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 BFARQ9NZS9 450 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 CDH22Q9UJ99 828 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 ZNF510Q9Y2H8 683 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 MTCH2Q9Y6C9 303 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 PRAMEF12O95522 483 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 POLBP06746 335 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 ALADP13716 330 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 NDST2P52849 883 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 RPS24P62847 133 aaKnown RBP22.96■■□□□ 1.27
CDX1-201ENST00000231656 BMPR2Q13873 1038 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 ZNF449Q6P9G9 518 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 FAM217AQ8IXS0 508 aa22.96■■□□□ 1.27
CDX1-201ENST00000231656 NUP210Q8TEM1 1887 aaPredicted RBP22.96■■□□□ 1.27
CDX1-201ENST00000231656 FCRL3Q96P31 734 aaPredicted RBP22.96■■□□□ 1.27
CDX1-201ENST00000231656 C12orf65Q9H3J6 166 aaKnown RBP22.96■■□□□ 1.27
CDX1-201ENST00000231656 TSPAN3O60637 253 aa22.95■■□□□ 1.26
CDX1-201ENST00000231656 DHRS4L1P0CG22 281 aa22.95■■□□□ 1.26
CDX1-201ENST00000231656 HOXB8P17481 243 aaPredicted RBP22.95■■□□□ 1.26
CDX1-201ENST00000231656 ETV4P43268 484 aa22.95■■□□□ 1.26
CDX1-201ENST00000231656 NPY2RP49146 381 aa22.95■■□□□ 1.26
CDX1-201ENST00000231656 SGSHP51688 502 aa22.95■■□□□ 1.26
CDX1-201ENST00000231656 FRG1Q14331 258 aaKnown RBP22.95■■□□□ 1.26
CDX1-201ENST00000231656 TMEM135Q86UB9 458 aa22.95■■□□□ 1.26
CDX1-201ENST00000231656 ARID3BQ8IVW6 561 aaPredicted RBP22.95■■□□□ 1.26
CDX1-201ENST00000231656 BBS7Q8IWZ6 715 aa22.95■■□□□ 1.26
CDX1-201ENST00000231656 ANKS4BQ8N8V4 417 aa22.95■■□□□ 1.26
CDX1-201ENST00000231656 DNAAF3Q8N9W5 541 aa22.95■■□□□ 1.26
CDX1-201ENST00000231656 SPOCK2Q92563 424 aa22.95■■□□□ 1.26
CDX1-201ENST00000231656 MKS1Q9NXB0 559 aa22.95■■□□□ 1.26
CDX1-201ENST00000231656 UBP1Q9NZI7 540 aa22.95■■□□□ 1.26
CDX1-201ENST00000231656 CLEC1BQ9P126 229 aa22.95■■□□□ 1.26
CDX1-201ENST00000231656 SLC17A6Q9P2U8 582 aa22.95■■□□□ 1.26
CDX1-201ENST00000231656 USP15Q9Y4E8 981 aaPredicted RBP22.95■■□□□ 1.26
CDX1-201ENST00000231656 RPS6KL1Q9Y6S9 549 aa22.95■■□□□ 1.26
CDX1-201ENST00000231656 E2F8A0AVK6 867 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 CNTFP26441 200 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 MGAT5Q09328 741 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 SF3A3Q12874 501 aaKnown RBP eCLIP22.94■■□□□ 1.26
CDX1-201ENST00000231656 ADGRE1Q14246 886 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 CERCAMQ5T4B2 595 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 NAPEPLDQ6IQ20 393 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 CES3Q6UWW8 571 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 TIFABQ6ZNK6 161 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 RIN3Q8TB24 985 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 CDKL2Q92772 493 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 FATE1Q969F0 183 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 APOL2Q9BQE5 337 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 IPO11Q9UI26 975 aaKnown RBP22.94■■□□□ 1.26
CDX1-201ENST00000231656 AAR2Q9Y312 384 aaKnown RBP22.94■■□□□ 1.26
CDX1-201ENST00000231656 CHD5Q8TDI0 1954 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 BRWD1Q9NSI6 2320 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.94■■□□□ 1.26
CDX1-201ENST00000231656 GFRA2O00451 464 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 PEX11BO96011 259 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 HLA-DQB2P05538 268 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 POU3F3P20264 500 aaPredicted RBP22.94■■□□□ 1.26
CDX1-201ENST00000231656 FSHRP23945 695 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 OR1E1P30953 314 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 MAPKAPK2P49137 400 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 DNAJC3Q13217 504 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 SEPT7Q16181 437 aaKnown RBP22.94■■□□□ 1.26
CDX1-201ENST00000231656 PACS1Q6VY07 963 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 SPATA21Q7Z572 469 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 OTUD6BQ8N6M0 293 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 SPATA22Q8NHS9 363 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 LRRC8CQ8TDW0 803 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 CERS2Q96G23 380 aa22.94■■□□□ 1.26
CDX1-201ENST00000231656 RETREG1Q9H6L5 497 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms