RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 GANCQ8TET4 914 aa26.2■■□□□ 1.78
TRIM28-204ENST00000594806 ZNF419Q96HQ0 510 aaPredicted RBP26.2■■□□□ 1.78
TRIM28-204ENST00000594806 GDAP1L1Q96MZ0 367 aa26.2■■□□□ 1.78
TRIM28-204ENST00000594806 GOLPH3Q9H4A6 298 aa26.2■■□□□ 1.78
TRIM28-204ENST00000594806 CD93Q9NPY3 652 aa26.2■■□□□ 1.78
TRIM28-204ENST00000594806 HECAQ9UBI9 543 aaPredicted RBP26.2■■□□□ 1.78
TRIM28-204ENST00000594806 MFHAS1Q9Y4C4 1052 aa26.2■■□□□ 1.78
TRIM28-204ENST00000594806 RALGAPA1Q6GYQ0 2036 aa26.19■■□□□ 1.78
TRIM28-204ENST00000594806 CCDC66A2RUB6 948 aa26.19■■□□□ 1.78
TRIM28-204ENST00000594806 SLC7A4O43246 635 aa26.19■■□□□ 1.78
TRIM28-204ENST00000594806 PALMO75781 387 aa26.19■■□□□ 1.78
TRIM28-204ENST00000594806 ZRANB2O95218 330 aaKnown RBP eCLIP26.19■■□□□ 1.784e-7■■□□□ 13.4
TRIM28-204ENST00000594806 IGSF6O95976 241 aa26.19■■□□□ 1.78
TRIM28-204ENST00000594806 MX2P20592 715 aa26.19■■□□□ 1.78
TRIM28-204ENST00000594806 CCNHP51946 323 aaPredicted RBP26.19■■□□□ 1.78
TRIM28-204ENST00000594806 RHOAP61586 193 aa26.19■■□□□ 1.78
TRIM28-204ENST00000594806 LEKR1Q6ZMV7 388 aa26.19■■□□□ 1.78
TRIM28-204ENST00000594806 LRRC57Q8N9N7 239 aa26.19■■□□□ 1.78
TRIM28-204ENST00000594806 NSMCE1Q8WV22 266 aa26.19■■□□□ 1.78
TRIM28-204ENST00000594806 FAM131CQ96AQ9 280 aa26.19■■□□□ 1.78
TRIM28-204ENST00000594806 PPP1R16AQ96I34 528 aa26.19■■□□□ 1.78
TRIM28-204ENST00000594806 TM6SF2Q9BZW4 377 aa26.19■■□□□ 1.78
TRIM28-204ENST00000594806 RIF1Q5UIP0 2472 aaKnown RBP26.19■■□□□ 1.78
TRIM28-204ENST00000594806 FAM186AA6NE01 2351 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 GPR179Q6PRD1 2367 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 A0A1W2PP55 124 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 MACROD2A1Z1Q3 448 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 GRID2IPA4D2P6 1211 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 CTNNA1P35221 906 aaKnown RBP26.18■■□□□ 1.78
TRIM28-204ENST00000594806 RENBPP51606 427 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 GALNT2Q10471 571 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 GRM3Q14832 879 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 CYTH1Q15438 398 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 TAZQ16635 292 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 SLC9A4Q6AI14 798 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 TMEFF1Q8IYR6 380 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 HDDC3Q8N4P3 179 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 GPR161Q8N6U8 529 aaKnown RBP26.18■■□□□ 1.78
TRIM28-204ENST00000594806 EXD1Q8NHP7 514 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 RNF25Q96BH1 459 aaPredicted RBP26.18■■□□□ 1.78
TRIM28-204ENST00000594806 RBM41Q96IZ5 413 aaKnown RBP26.18■■□□□ 1.78
TRIM28-204ENST00000594806 DYRK4Q9NR20 520 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 SARDHQ9UL12 918 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 PCDHA3Q9Y5H8 950 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 WASF2Q9Y6W5 498 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 PIEZO1Q92508 2521 aa26.18■■□□□ 1.78
TRIM28-204ENST00000594806 NUMA1Q14980 2115 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 MAFKO60675 156 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 RNASEH2AO75792 299 aaKnown RBP26.17■■□□□ 1.78
TRIM28-204ENST00000594806 CTSLP07711 333 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 CTNNA2P26232 953 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 CSNK1DP48730 415 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 DHPSP49366 369 aaPredicted RBP26.17■■□□□ 1.78
TRIM28-204ENST00000594806 COPS2P61201 443 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 NSUN2Q08J23 767 aaKnown RBP eCLIP26.17■■□□□ 1.78
TRIM28-204ENST00000594806 TFDP2Q14188 446 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 GSE1Q14687 1217 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 MYLK3Q32MK0 819 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 ARSIQ5FYB1 569 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 TIGD7Q6NT04 549 aaPredicted RBP26.17■■□□□ 1.78
TRIM28-204ENST00000594806 TP53INP2Q8IXH6 220 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 BBS5Q8N3I7 341 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 RYBPQ8N488 228 aaPredicted RBP26.17■■□□□ 1.78
TRIM28-204ENST00000594806 AADATQ8N5Z0 425 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 CHST14Q8NCH0 376 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 FATE1Q969F0 183 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 ZNF830Q96NB3 372 aaPredicted RBP26.17■■□□□ 1.78
TRIM28-204ENST00000594806 GPR174Q9BXC1 333 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 OSBPL1AQ9BXW6 950 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 NEUROG2Q9H2A3 272 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 KDM4CQ9H3R0 1056 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 SEPT3Q9UH03 358 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 AMFRQ9UKV5 643 aa26.17■■□□□ 1.78
TRIM28-204ENST00000594806 TPX2Q9ULW0 747 aaKnown RBP26.17■■□□□ 1.78
TRIM28-204ENST00000594806 SHROOM3Q8TF72 1996 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 GON4LQ3T8J9 2241 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 APOL1O14791 398 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 MFSD11O43934 449 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 LEFTY1O75610 366 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 SEMA4FO95754 770 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 ACSL1P33121 698 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 HOXD12P35452 270 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 DRD3P35462 400 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 HSPA9P38646 679 aaKnown RBP26.16■■□□□ 1.78
TRIM28-204ENST00000594806 GARSP41250 739 aaKnown RBP26.16■■□□□ 1.78
TRIM28-204ENST00000594806 CDKN2BP42772 138 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 ZNF33AQ06730 810 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 SYCP2LQ5T4T6 812 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 LYSMD4Q5XG99 296 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 MFSD7Q6UXD7 560 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 ARHGAP36Q6ZRI8 547 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 BZW1Q7L1Q6 419 aaKnown RBP26.16■■□□□ 1.78
TRIM28-204ENST00000594806 FAM124AQ86V42 546 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 TSGA13Q96PP4 275 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 CINPQ9BW66 212 aaPredicted RBP26.16■■□□□ 1.78
TRIM28-204ENST00000594806 HDAC8Q9BY41 377 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 CPEB1Q9BZB8 566 aaKnown RBP26.16■■□□□ 1.78
TRIM28-204ENST00000594806 LHX3Q9UBR4 397 aa26.16■■□□□ 1.78
TRIM28-204ENST00000594806 TRIM10Q9UDY6 481 aa26.16■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms