RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 GRIN3AQ8TCU5 1115 aa18■□□□□ 0.47
NUP54-205ENST00000507257 TCF12Q99081 682 aa18■□□□□ 0.47
NUP54-205ENST00000507257 SEMA6AQ9H2E6 1030 aa18■□□□□ 0.47
NUP54-205ENST00000507257 TMEM9Q9P0T7 183 aa18■□□□□ 0.47
NUP54-205ENST00000507257 TMEM181Q9P2C4 612 aa18■□□□□ 0.47
NUP54-205ENST00000507257 SNX13Q9Y5W8 968 aa18■□□□□ 0.47
NUP54-205ENST00000507257 SNX9Q9Y5X1 595 aa18■□□□□ 0.47
NUP54-205ENST00000507257 KCNU1A8MYU2 1149 aa17.99■□□□□ 0.47
NUP54-205ENST00000507257 AP3B1O00203 1094 aa17.99■□□□□ 0.47
NUP54-205ENST00000507257 AKAP10O43572 662 aa17.99■□□□□ 0.47
NUP54-205ENST00000507257 INHBBP09529 407 aa17.99■□□□□ 0.47
NUP54-205ENST00000507257 EDNRBP24530 442 aa17.99■□□□□ 0.47
NUP54-205ENST00000507257 NME5P56597 212 aa17.99■□□□□ 0.47
NUP54-205ENST00000507257 SLC12A1Q13621 1099 aa17.99■□□□□ 0.47
NUP54-205ENST00000507257 PSMD5Q16401 504 aa17.99■□□□□ 0.47
NUP54-205ENST00000507257 PLPPR4Q7Z2D5 763 aa17.99■□□□□ 0.47
NUP54-205ENST00000507257 TRIM50Q86XT4 487 aa17.99■□□□□ 0.47
NUP54-205ENST00000507257 FAM47BQ8NA70 645 aa17.99■□□□□ 0.47
NUP54-205ENST00000507257 FAM156AQ8NDB6 213 aa17.99■□□□□ 0.47
NUP54-205ENST00000507257 CHST13Q8NET6 341 aa17.99■□□□□ 0.47
NUP54-205ENST00000507257 ZSCAN18Q8TBC5 510 aaPredicted RBP17.99■□□□□ 0.47
NUP54-205ENST00000507257 ZUFSPQ96AP4 578 aa17.99■□□□□ 0.47
NUP54-205ENST00000507257 ATXN7L3BQ96GX2 97 aa17.99■□□□□ 0.47
NUP54-205ENST00000507257 FNDC1Q4ZHG4 1894 aaPredicted RBP17.99■□□□□ 0.47
NUP54-205ENST00000507257 A0A0G2JMZ2 1700 aa17.99■□□□□ 0.47
NUP54-205ENST00000507257 LRRC37A2A6NM11 1700 aa17.99■□□□□ 0.47
NUP54-205ENST00000507257 F5H423 210 aaPredicted RBP17.98■□□□□ 0.47
NUP54-205ENST00000507257 PSMD12O00232 456 aaPredicted RBP17.98■□□□□ 0.47
NUP54-205ENST00000507257 JUNP05412 331 aaKnown RBP17.98■□□□□ 0.47
NUP54-205ENST00000507257 PDGFRBP09619 1106 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 HSPA8P11142 646 aaKnown RBP17.98■□□□□ 0.47
NUP54-205ENST00000507257 TCN1P20061 433 aaPredicted RBP17.98■□□□□ 0.47
NUP54-205ENST00000507257 ATXN1P54253 815 aaKnown RBP17.98■□□□□ 0.47
NUP54-205ENST00000507257 SLC10A6Q3KNW5 377 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 C6orf10Q5SRN2 563 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 REP15Q6BDI9 236 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 LRRC8EQ6NSJ5 796 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 LYSMD3Q7Z3D4 306 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 LRRC71Q8N4P6 559 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 CIB1Q99828 191 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 MAGEB5Q9BZ81 275 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 UPF3AQ9H1J1 476 aaKnown RBP17.98■□□□□ 0.47
NUP54-205ENST00000507257 PRDM12Q9H4Q4 367 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 TUBGCP4Q9UGJ1 667 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 EBF1Q9UH73 591 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 PRORSD1PA6NEY8 169 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 SOBPA7XYQ1 873 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 DLX3O60479 287 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 CSPG5O95196 566 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 CHRNA5P30532 468 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 ATXN3P54252 364 aaPredicted RBP17.98■□□□□ 0.47
NUP54-205ENST00000507257 PRKCQQ04759 706 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 TREML2Q5T2D2 321 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 ITPRIPL1Q6GPH6 555 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 GK5Q6ZS86 529 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 ZC3HC1Q86WB0 502 aaKnown RBP17.98■□□□□ 0.47
NUP54-205ENST00000507257 IFNLR1Q8IU57 520 aaPredicted RBP17.98■□□□□ 0.47
NUP54-205ENST00000507257 CAMK1DQ8IU85 385 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 ZNF280CQ8ND82 737 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 PPP1R36Q96LQ0 422 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 B3GNT5Q9BYG0 378 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 PCDHAC1Q9H158 963 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 SNX25Q9H3E2 840 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 CD320Q9NPF0 282 aa17.98■□□□□ 0.47
NUP54-205ENST00000507257 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.98■□□□□ 0.47
NUP54-205ENST00000507257 HEMK1Q9Y5R4 338 aaPredicted RBP17.98■□□□□ 0.47
NUP54-205ENST00000507257 PLOD2O00469 737 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 SUPT3HO75486 399 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 BAIAP3O94812 1187 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 STAMBPO95630 424 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 SLC35E2BP0CK96 405 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 ACADSBP45954 432 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 CCR10P46092 362 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 ATP4BP51164 291 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 CTBSQ01459 385 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 RELAQ04206 551 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 GRM3Q14832 879 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 PID1Q7Z2X4 250 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 UNC93AQ86WB7 457 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 CENPLQ8N0S6 344 aaPredicted RBP17.97■□□□□ 0.47
NUP54-205ENST00000507257 FSTL5Q8N475 847 aaPredicted RBP17.97■□□□□ 0.47
NUP54-205ENST00000507257 HMGCLL1Q8TB92 370 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 RNF139Q8WU17 664 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 SLC25A23Q9BV35 468 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 YTHDF1Q9BYJ9 559 aaKnown RBP17.97■□□□□ 0.47
NUP54-205ENST00000507257 BRD8Q9H0E9 1235 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 NOL11Q9H8H0 719 aaKnown RBP17.97■□□□□ 0.47
NUP54-205ENST00000507257 CCM2LQ9NUG4 571 aaPredicted RBP17.97■□□□□ 0.47
NUP54-205ENST00000507257 DPP3Q9NY33 737 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 NCKIPSDQ9NZQ3 722 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.97■□□□□ 0.47
NUP54-205ENST00000507257 SLC39A10Q9ULF5 831 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 RUVBL2Q9Y230 463 aaKnown RBP17.97■□□□□ 0.47
NUP54-205ENST00000507257 TDRKHQ9Y2W6 561 aaKnown RBP17.97■□□□□ 0.47
NUP54-205ENST00000507257 HES2Q9Y543 173 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 COL4A5P29400 1685 aa17.97■□□□□ 0.47
NUP54-205ENST00000507257 AQP12BA6NM10 295 aa17.96■□□□□ 0.47
NUP54-205ENST00000507257 FBP2O00757 339 aa17.96■□□□□ 0.47
NUP54-205ENST00000507257 CYP2B6P20813 491 aa17.96■□□□□ 0.47
NUP54-205ENST00000507257 GABRB3P28472 473 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms