RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 PARVAQ9NVD7 372 aa19.77■□□□□ 0.76
USP40-207ENST00000450940 BTBD3Q9Y2F9 522 aa19.77■□□□□ 0.76
USP40-207ENST00000450940 COL5A1P20908 1838 aaPredicted RBP19.76■□□□□ 0.75
USP40-207ENST00000450940 PTPRBP23467 1997 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 SYCE3A1L190 88 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 KDELR3O43731 214 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 RAMP2O60895 175 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 RNGTTO60942 597 aaKnown RBP19.76■□□□□ 0.75
USP40-207ENST00000450940 DKK1O94907 266 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 SERPINC1P01008 464 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 PBX1P40424 430 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 NXPH1P58417 271 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 OVGP1Q12889 678 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 POLD3Q15054 466 aaPredicted RBP19.76■□□□□ 0.75
USP40-207ENST00000450940 SHBQ15464 509 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 SETMARQ53H47 684 aaPredicted RBP19.76■□□□□ 0.75
USP40-207ENST00000450940 SCYL2Q6P3W7 929 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 TMC6Q7Z403 805 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 GATA6Q92908 595 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 VOPP1Q96AW1 172 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 PPP1R16AQ96I34 528 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 HPCAL4Q9UM19 191 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 APOBEC2Q9Y235 224 aaKnown RBP19.76■□□□□ 0.75
USP40-207ENST00000450940 FCF1Q9Y324 198 aaKnown RBP19.76■□□□□ 0.75
USP40-207ENST00000450940 MSRB2Q9Y3D2 182 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 ACTL7AQ9Y615 435 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 TRPM6Q9BX84 2022 aa19.76■□□□□ 0.75
USP40-207ENST00000450940 TMEM191CA6NGB0 347 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 ZSCAN5CA6NGD5 496 aaPredicted RBP19.75■□□□□ 0.75
USP40-207ENST00000450940 PRAMEF26H0Y7S4 382 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 DDX3XO00571 662 aaKnown RBP eCLIP19.75■□□□□ 0.75
USP40-207ENST00000450940 PROS1P07225 676 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 ITGB7P26010 798 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 EPHB2P29323 1055 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 MAT2AP31153 395 aaKnown RBP19.75■□□□□ 0.75
USP40-207ENST00000450940 HTR7P34969 479 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 GRK6P43250 576 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 RXRGP48443 463 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 CCNHP51946 323 aaPredicted RBP19.75■□□□□ 0.75
USP40-207ENST00000450940 YBEYP58557 167 aaPredicted RBP19.75■□□□□ 0.75
USP40-207ENST00000450940 ST3GAL2Q16842 350 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 UNQ6494/PRO21346Q6UXR6 183 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 SLCO6A1Q86UG4 719 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 HORMAD1Q86X24 394 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 UMODL1-AS1Q8N2C9 162 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 CHCHD4Q8N4Q1 142 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 GRIN3AQ8TCU5 1115 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 FNIP1Q8TF40 1166 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 LRIG1Q96JA1 1093 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 EPAS1Q99814 870 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 DYRK4Q9NR20 520 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 GDF3Q9NR23 364 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 TOR4AQ9NXH8 423 aa19.75■□□□□ 0.75
USP40-207ENST00000450940 A0A1W2PQJ5 194 aa19.74■□□□□ 0.75
USP40-207ENST00000450940 A0A1W2PQU0 124 aa19.74■□□□□ 0.75
USP40-207ENST00000450940 TMCO5BA8MYB1 307 aa19.74■□□□□ 0.75
USP40-207ENST00000450940 EIF3CLB5ME19 914 aaKnown RBP19.74■□□□□ 0.75
USP40-207ENST00000450940 YKT6O15498 198 aa19.74■□□□□ 0.75
USP40-207ENST00000450940 GSRP00390 522 aa19.74■□□□□ 0.75
USP40-207ENST00000450940 FTLP02792 175 aaPredicted RBP19.74■□□□□ 0.75
USP40-207ENST00000450940 DESP17661 470 aa19.74■□□□□ 0.75
USP40-207ENST00000450940 FANCCQ00597 558 aa19.74■□□□□ 0.75
USP40-207ENST00000450940 KLHL30Q0D2K2 578 aa19.74■□□□□ 0.75
USP40-207ENST00000450940 ZNF284Q2VY69 593 aa19.74■□□□□ 0.75
USP40-207ENST00000450940 INO80DQ53TQ3 878 aaPredicted RBP19.74■□□□□ 0.75
USP40-207ENST00000450940 LUZP1Q86V48 1076 aa19.74■□□□□ 0.75
USP40-207ENST00000450940 SPATS2Q86XZ4 545 aaKnown RBP19.74■□□□□ 0.75
USP40-207ENST00000450940 ARFGAP1Q8N6T3 406 aa19.74■□□□□ 0.75
USP40-207ENST00000450940 TMEM145Q8NBT3 493 aa19.74■□□□□ 0.75
USP40-207ENST00000450940 SAP25Q8TEE9 199 aa19.74■□□□□ 0.75
USP40-207ENST00000450940 CASKIN2Q8WXE0 1202 aa19.74■□□□□ 0.75
USP40-207ENST00000450940 EIF3CQ99613 913 aaKnown RBP19.74■□□□□ 0.75
USP40-207ENST00000450940 ISCUQ9H1K1 167 aa19.74■□□□□ 0.75
USP40-207ENST00000450940 HECAQ9UBI9 543 aaPredicted RBP19.74■□□□□ 0.75
USP40-207ENST00000450940 KLK13Q9UKR3 277 aa19.74■□□□□ 0.75
USP40-207ENST00000450940 PLXNB3Q9ULL4 1909 aa19.74■□□□□ 0.75
USP40-207ENST00000450940 C1QTNF9BB2RNN3 333 aa19.73■□□□□ 0.75
USP40-207ENST00000450940 FGF10O15520 208 aaPredicted RBP19.73■□□□□ 0.75
USP40-207ENST00000450940 AP1G1O43747 822 aa19.73■□□□□ 0.75
USP40-207ENST00000450940 CREB3O43889 395 aa19.73■□□□□ 0.75
USP40-207ENST00000450940 MAGEC1O60732 1142 aa19.73■□□□□ 0.75
USP40-207ENST00000450940 C1QTNF9P0C862 333 aa19.73■□□□□ 0.75
USP40-207ENST00000450940 DNA2P51530 1060 aa19.73■□□□□ 0.75
USP40-207ENST00000450940 NEK3P51956 506 aa19.73■□□□□ 0.75
USP40-207ENST00000450940 STAT4Q14765 748 aa19.73■□□□□ 0.75
USP40-207ENST00000450940 TMEM259Q4ZIN3 620 aa19.73■□□□□ 0.75
USP40-207ENST00000450940 PRAMEF14Q5SWL7 426 aa19.73■□□□□ 0.75
USP40-207ENST00000450940 OXR1Q8N573 874 aa19.73■□□□□ 0.75
USP40-207ENST00000450940 KDF1Q8NAX2 398 aaPredicted RBP19.73■□□□□ 0.75
USP40-207ENST00000450940 OR2AP1Q8NGE2 309 aa19.73■□□□□ 0.75
USP40-207ENST00000450940 SYN2Q92777 582 aaPredicted RBP19.73■□□□□ 0.75
USP40-207ENST00000450940 CATSPERBQ9H7T0 1116 aa19.73■□□□□ 0.75
USP40-207ENST00000450940 ZFR2Q9UPR6 939 aaKnown RBP19.73■□□□□ 0.75
USP40-207ENST00000450940 ARID1BQ8NFD5 2236 aaPredicted RBP19.73■□□□□ 0.75
USP40-207ENST00000450940 ATMINO43313 823 aaPredicted RBP19.72■□□□□ 0.75
USP40-207ENST00000450940 TNFSF14O43557 240 aa19.72■□□□□ 0.75
USP40-207ENST00000450940 POP4O95707 220 aaKnown RBP19.72■□□□□ 0.75
USP40-207ENST00000450940 ATXN1LP0C7T5 689 aaKnown RBP19.72■□□□□ 0.75
USP40-207ENST00000450940 SKILP12757 684 aa19.72■□□□□ 0.75
USP40-207ENST00000450940 ADRB3P13945 408 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms