RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 RNF19BQ6ZMZ0 732 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 ILDR2Q71H61 639 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 JAZF1Q86VZ6 243 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 KLHL5Q96PQ7 755 aa14.09□□□□□ -0.15
CCDC88A-201ENST00000263630 ABHD14A-ACY1A0A1B0GW23 586 aa14.08□□□□□ -0.15
CCDC88A-201ENST00000263630 UBOX5O94941 541 aa14.08□□□□□ -0.15
CCDC88A-201ENST00000263630 LTFP02788 710 aa14.08□□□□□ -0.15
CCDC88A-201ENST00000263630 PGAM1P18669 254 aa14.08□□□□□ -0.15
CCDC88A-201ENST00000263630 RASGEF1BQ0VAM2 473 aa14.08□□□□□ -0.15
CCDC88A-201ENST00000263630 VPS26BQ4G0F5 336 aa14.08□□□□□ -0.15
CCDC88A-201ENST00000263630 GALNT7Q86SF2 657 aa14.08□□□□□ -0.15
CCDC88A-201ENST00000263630 EIF1ADQ8N9N8 165 aaKnown RBP14.08□□□□□ -0.15
CCDC88A-201ENST00000263630 RDH8Q9NYR8 311 aa14.08□□□□□ -0.15
CCDC88A-201ENST00000263630 USP27XA6NNY8 438 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 KCNA6P17658 529 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 PTPN5P54829 565 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 PPP3R1P63098 170 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 SLC25A25Q6KCM7 469 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 TMC8Q8IU68 726 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 CCR1P32246 355 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 PITPNAQ00169 270 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 MCL1Q07820 350 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 POU6F1Q14863 301 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 ADGRF2Q8IZF7 708 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 SENP6Q9GZR1 1112 aaPredicted RBP14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 CATSPERZQ9NTU4 200 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 TRHDEQ9UKU6 1024 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 C15orf41Q9Y2V0 281 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 SLC25A27O95847 323 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 CCNCP24863 283 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 SRSF11Q05519 484 aaKnown RBP14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 NKX1-1Q15270 411 aaPredicted RBP14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 PTCHD4Q6ZW05 846 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 REXO1L1PQ8IX06 675 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 ZMYM2Q9UBW7 1377 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 B3GAT3O94766 335 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 ANXA5P08758 320 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 SPIBQ01892 262 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 RBM20Q5T481 1227 aaKnown RBP14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 FAAH2Q6GMR7 532 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 SNX20Q7Z614 316 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 CSGALNACT1Q8TDX6 532 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 PHF12Q96QT6 1004 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 VPS45Q9NRW7 570 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 ARL15Q9NXU5 204 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 TRIM64BA6NI03 449 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 TMEM62Q0P6H9 643 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 RAPSNQ13702 412 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 CYP4X1Q8N118 509 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 APOPT1Q96IL0 206 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 PNPLA3Q9NST1 481 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 ZC3H11AO75152 810 aaKnown RBP eCLIP14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 FGFR3P22607 806 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 SLC6A2P23975 617 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 AXLP30530 894 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 RETSATQ6NUM9 610 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 FAM117BQ6P1L5 589 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 ARMC10Q8N2F6 343 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 CDC42BPGQ6DT37 1551 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 TSPOAP1O95153 1857 aa14.08□□□□□ -0.16
CCDC88A-201ENST00000263630 ERBB3P21860 1342 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 SNAP23O00161 211 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 OR10H3O60404 316 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 TDP2O95551 362 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 TSEN15Q8WW01 171 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 CDRT15Q96T59 188 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 SP140LQ9H930 580 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 SLAIN2Q9P270 581 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 QSOX1O00391 747 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 C9P02748 559 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 VDRP11473 427 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 GRK5P34947 590 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 RBM34P42696 430 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 MTF1Q14872 753 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 CDKL4Q5MAI5 379 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 ZCCHC12Q6PEW1 402 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 CYP2R1Q6VVX0 501 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 ATXN2LQ8WWM7 1075 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 PCDHGA10Q9Y5H3 936 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 TTC34A8MYJ7 566 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 ATMINO43313 823 aaPredicted RBP14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 ERCC2P18074 760 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 CWF19L1Q69YN2 538 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 ZDHHC17Q8IUH5 632 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 CMTR2Q8IYT2 770 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 ANKEF1Q9NU02 776 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 CHRNA5P30532 468 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 CDH5P33151 784 aaPredicted RBP14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 CCZ1BP86790 482 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 CCZ1P86791 482 aaPredicted RBP14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 N4BP2L1Q5TBK1 243 aaPredicted RBP14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 MARCH10Q8NA82 808 aaPredicted RBP14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 FAM81AQ8TBF8 368 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 CCNKO75909 580 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 MKRN4PQ13434 485 aaPredicted RBP14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 ANTXR1Q9H6X2 564 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 AASSQ9UDR5 926 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 PCDHA3Q9Y5H8 950 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 DNTTP04053 509 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 BNIP2Q12982 314 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms