RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 ICMTO60725 284 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 KRT36O76013 467 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 GNRH1P01148 92 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 ENO3P13929 434 aaPredicted RBP10.58□□□□□ -0.72
LIG1-220ENST00000601091 CCNB1P14635 433 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 IDUAP35475 653 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 CBX5P45973 191 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 RXRGP48443 463 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 OCRLQ01968 901 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 SNAPC2Q13487 334 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 PON2Q15165 354 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 SF3B4Q15427 424 aaKnown RBP eCLIP10.58□□□□□ -0.721e-7■■■■■ 41.2
LIG1-220ENST00000601091 C16orf54Q6UWD8 224 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 LCLAT1Q6UWP7 414 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 C16orf89Q6UX73 402 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 IZUMO2Q6UXV1 221 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 STX12Q86Y82 276 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 KCT2Q8NC54 265 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 PTPRN2Q92932 1015 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 GPR20Q99678 358 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 MECRQ9BV79 373 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 CEP41Q9BYV8 373 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 TRPS1Q9UHF7 1281 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 CYTH4Q9UIA0 394 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 SNX6Q9UNH7 406 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 PLLPQ9Y342 182 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 DDX60LQ5H9U9 1706 aaKnown RBP10.58□□□□□ -0.72
LIG1-220ENST00000601091 RREB1Q92766 1687 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 RNF103O00237 685 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 DFFAO00273 331 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 IFRD1O00458 451 aaPredicted RBP10.58□□□□□ -0.72
LIG1-220ENST00000601091 FBP2O00757 339 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 TMEM63AO94886 807 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 ARHGEF15O94989 841 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 EPB42P16452 691 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 IL1R2P27930 398 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 TAF5Q15542 800 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 PDCD4Q53EL6 469 aaKnown RBP10.58□□□□□ -0.72
LIG1-220ENST00000601091 DUS1LQ6P1R4 473 aaKnown RBP10.58□□□□□ -0.72
LIG1-220ENST00000601091 ANGPTL8Q6UXH0 198 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 C4orf50Q6ZRC1 276 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 ARCQ7LC44 396 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 RNF135Q8IUD6 432 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 C10orf82Q8WW14 230 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 EFHD2Q96C19 240 aaPredicted RBP10.58□□□□□ -0.72
LIG1-220ENST00000601091 KATNAL1Q9BW62 490 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 DDIT4Q9NX09 232 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 COL2A1P02458 1487 aaPredicted RBP10.58□□□□□ -0.72
LIG1-220ENST00000601091 CNTNAP2Q9UHC6 1331 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 CAPN14A8MX76 684 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 THRAP10827 490 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 PGAM1P18669 254 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 YWHAZP63104 245 aaKnown RBP10.58□□□□□ -0.72
LIG1-220ENST00000601091 DSC3Q14574 896 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 SETD3Q86TU7 594 aaPredicted RBP10.58□□□□□ -0.72
LIG1-220ENST00000601091 RYBPQ8N488 228 aaPredicted RBP10.58□□□□□ -0.72
LIG1-220ENST00000601091 CATSPER1Q8NEC5 780 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 RNF38Q9H0F5 515 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 CLUHO75153 1309 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 A0A0A0MRY4 1105 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 MATN2O00339 956 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 DGKIO75912 1065 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 ZNF286BP0CG31 522 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 ATF4P18848 351 aaPredicted RBP10.57□□□□□ -0.72
LIG1-220ENST00000601091 CFL1P23528 166 aaKnown RBP10.57□□□□□ -0.72
LIG1-220ENST00000601091 PCP4P48539 62 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 CLK3P49761 638 aaKnown RBP10.57□□□□□ -0.72
LIG1-220ENST00000601091 ARHGDIBP52566 201 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 ZNF280AP59817 542 aaPredicted RBP10.57□□□□□ -0.72
LIG1-220ENST00000601091 NDUFA5Q16718 116 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 INSCQ1MX18 579 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 KHDC1Q4VXA5 237 aaKnown RBP10.57□□□□□ -0.72
LIG1-220ENST00000601091 KIAA1614Q5VZ46 1190 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 ANO7Q6IWH7 933 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 TMC5Q6UXY8 1006 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 UNC93AQ86WB7 457 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 CHSY1Q86X52 802 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 DEFB106AQ8N104 65 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 POU5F2Q8N7G0 328 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 LSMEM1Q8N8F7 131 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 LRRN4Q8WUT4 740 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 SPATA13Q96N96 652 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 ZNF184Q99676 751 aaPredicted RBP10.57□□□□□ -0.72
LIG1-220ENST00000601091 NMUR2Q9GZQ4 415 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 WASH6PQ9NQA3 447 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 PCDHGA8Q9Y5G5 932 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 GPR25O00155 361 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 KCNK1O00180 336 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 BIRC5O15392 142 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 FAM155BO75949 473 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 LGALS2P05162 132 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 HOXC6P09630 235 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 ASPAP45381 313 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 CACNA2D1P54289 1103 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 GPX6P59796 221 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 VEPH1Q14D04 833 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 GALNTL6Q49A17 601 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 SPDYAQ5MJ70 313 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 PDPK2PQ6A1A2 396 aa10.57□□□□□ -0.72
LIG1-220ENST00000601091 SLC27A1Q6PCB7 646 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms