RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 TMEM121Q9BTD3 319 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 CFAP97Q9P2B7 532 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 PPARGC1AQ9UBK2 798 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 TRANK1O15050 2925 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 MEI4A8MW99 385 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 AGRPO00253 132 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 XYLBO75191 536 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 TBX10O75333 385 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 MX2P20592 715 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 ETFBP38117 255 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 RIPK1Q13546 671 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 AUHQ13825 339 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 FOXB2Q5VYV0 432 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 SPATA18Q8TC71 538 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 UTP4Q969X6 686 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 KCTD15Q96SI1 283 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 CCDC77Q9BR77 488 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 CDC42EP4Q9H3Q1 356 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 ATXN10Q9UBB4 475 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 KNL1Q8NG31 2342 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 GOLGA8CPA6NN73 597 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 TMCC1O94876 653 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 HAUS5O94927 633 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 AGTP01019 485 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 ZSCAN5DPP0CG00 497 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 ETS1P14921 441 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 CORO1AP31146 461 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 ADRA1BP35368 520 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 MAGEA11P43364 429 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 ERVK-21P61565 698 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 OTUD4Q01804 1114 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 MMEL1Q495T6 779 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 SH2D4BQ5SQS7 431 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 GAREM2Q75VX8 874 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 PIGWQ7Z7B1 504 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 GALNT4Q8N4A0 578 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 GABPB2Q8TAK5 448 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 ACTL9Q8TC94 416 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 RSAD2Q8WXG1 361 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 SERPINB11Q96P15 392 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 PCDH18Q9HCL0 1135 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 NDE1Q9NXR1 346 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 HEY2Q9UBP5 337 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 DNMT3LQ9UJW3 386 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 GGA2Q9UJY4 613 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 SCML2Q9UQR0 700 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 TRIOO75962 3097 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 TCRBV5S1A1TA0A578 114 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 ZNF840PA6NDX5 716 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 C5orf60A6NFR6 353 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 B2RBV5 119 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 KCNK1O00180 336 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 TBC1D4O60343 1298 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 ABLIM3O94929 683 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 FAM163BP0C2L3 166 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 LINC00271P0C7V0 271 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 NFKBIAP25963 317 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 VIPR2P41587 438 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 CCR2P41597 374 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 CLCN4P51793 760 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 RPS24P62847 133 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 GBE1Q04446 702 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 ATP1A4Q13733 1029 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 TRIP10Q15642 601 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 BOLA3Q53S33 107 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 TFDP3Q5H9I0 405 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 PAOXQ6QHF9 649 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 NLRP9Q7RTR0 991 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 PPP1R14CQ8TAE6 165 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 ITFG1Q8TB96 612 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 DDI1Q8WTU0 396 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 WBP2Q969T9 261 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 NPY6RQ99463 290 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 DCLRE1BQ9H816 532 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 ARHGEF3Q9NR81 526 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 MRGBPQ9NV56 204 aa8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.84□□□□□ -0.99
LIMCH1-209ENST00000509277 MYOFQ9NZM1 2061 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 LOC100653049A0A140TA62 436 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 BTNL10A8MVZ5 291 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 NRG2O14511 850 aaPredicted RBP8.84□□□□□ -1
LIMCH1-209ENST00000509277 APOL1O14791 398 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 PSTPIP1O43586 416 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 KRT34O76011 436 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 RB1P06400 928 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 ALOX15P16050 662 aaPredicted RBP8.84□□□□□ -1
LIMCH1-209ENST00000509277 PRLRP16471 622 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 KCNA5P22460 613 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 ECHS1P30084 290 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 EIF3EP60228 445 aaKnown RBP8.84□□□□□ -1
LIMCH1-209ENST00000509277 SLC25A11Q02978 314 aaKnown RBP8.84□□□□□ -1
LIMCH1-209ENST00000509277 MPP2Q14168 576 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 C16orf72Q14CZ0 275 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 ACSBG2Q5FVE4 666 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 LPCAT4Q643R3 524 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 RNF135Q8IUD6 432 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 TCEAL8Q8IYN2 117 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 RCOR2Q8IZ40 523 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 SIX5Q8N196 739 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 CARNMT1Q8N4J0 409 aa8.84□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms