RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 AP3M1Q9Y2T2 418 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 HNRNPCL2B2RXH8 293 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 GOT1P17174 413 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 MAD2L1Q13257 205 aaPredicted RBP19.55■□□□□ 0.72
USP48-201ENST00000308271 AHI1Q8N157 1196 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 LRRN4Q8WUT4 740 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 CD101Q93033 1021 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 PAWRQ96IZ0 340 aaKnown RBP19.55■□□□□ 0.72
USP48-201ENST00000308271 TRIM45Q9H8W5 580 aaPredicted RBP19.55■□□□□ 0.72
USP48-201ENST00000308271 TAS2R13Q9NYV9 303 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 FADS3Q9Y5Q0 445 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.55■□□□□ 0.72
USP48-201ENST00000308271 MATN2O00339 956 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 CLCN5P51795 746 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 GDF10P55107 478 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 DDR2Q16832 855 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 SPANXN2Q5MJ10 180 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 FAM45BPQ6NSW5 357 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 UBR7Q8N806 425 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 RPRD1AQ96P16 312 aaPredicted RBP19.55■□□□□ 0.72
USP48-201ENST00000308271 SELENONQ9NZV5 590 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 LEF1Q9UJU2 399 aaPredicted RBP19.55■□□□□ 0.72
USP48-201ENST00000308271 CAMTA1Q9Y6Y1 1673 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 MFN2O95140 757 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 INSRRP14616 1297 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 LRRC74AQ0VAA2 488 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 MOGSQ13724 837 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 TLDC1Q6P9B6 456 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 OTUB1Q96FW1 271 aaPredicted RBP19.55■□□□□ 0.72
USP48-201ENST00000308271 EBF4Q9BQW3 602 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 MTFR1LQ9H019 292 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 C3orf18Q9UK00 162 aa19.55■□□□□ 0.72
USP48-201ENST00000308271 TIPRLO75663 272 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 ALOX5P09917 674 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 NFKB1P19838 968 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 UBE3AQ05086 875 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 ZIK1Q3SY52 487 aaPredicted RBP19.54■□□□□ 0.72
USP48-201ENST00000308271 REPS2Q8NFH8 660 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 P2RY11Q96G91 374 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 HOPXQ9BPY8 73 aaPredicted RBP19.54■□□□□ 0.72
USP48-201ENST00000308271 CINPQ9BW66 212 aaPredicted RBP19.54■□□□□ 0.72
USP48-201ENST00000308271 SNTG2Q9NY99 539 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 LMO7Q8WWI1 1683 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 ATG7O95352 703 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 ODC1P11926 461 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 COL6A2P12110 1019 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 HOXD13P35453 343 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 NAA20P61599 178 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 TTC23LQ6PF05 361 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 AADATQ8N5Z0 425 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 ZNF513Q8N8E2 541 aaPredicted RBP19.54■□□□□ 0.72
USP48-201ENST00000308271 BSNDQ8WZ55 320 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 LENG9Q96B70 501 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 TRMOQ9BU70 441 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 TXLNGYQ9BZA5 131 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 BCAS3Q9H6U6 928 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 PLK2Q9NYY3 685 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 SLC2A4P14672 509 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 TFEBP19484 476 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 CBX3Q13185 183 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 TRIM25Q14258 630 aaKnown RBP19.54■□□□□ 0.72
USP48-201ENST00000308271 FAM228AQ86W67 206 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 ALG9Q9H6U8 611 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 ELP3Q9H9T3 547 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 CNTNAP2Q9UHC6 1331 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 KLHL33A6NCF5 533 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 BBIP1A8MTZ0 92 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 MAFO75444 373 aaPredicted RBP19.54■□□□□ 0.72
USP48-201ENST00000308271 PRAMEF18Q5VWM3 479 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 ASRGL1Q7L266 308 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 KBTBD2Q8IY47 623 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 LPGAT1Q92604 370 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 CDT1Q9H211 546 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 ATXN3LQ9H3M9 355 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 VTA1Q9NP79 307 aa19.54■□□□□ 0.72
USP48-201ENST00000308271 CD48P09326 243 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 KRT20P35900 424 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 CDK18Q07002 472 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 TRIM74Q86UV6 250 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 TRIM73Q86UV7 250 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 METTL6Q8TCB7 284 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 WDR12Q9GZL7 423 aaKnown RBP19.53■□□□□ 0.72
USP48-201ENST00000308271 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP19.53■□□□□ 0.72
USP48-201ENST00000308271 HNRNPLP14866 589 aaKnown RBP eCLIP19.53■□□□□ 0.728e-8■■■■■ 29.5
USP48-201ENST00000308271 DMPKQ09013 629 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 CMPK2Q5EBM0 449 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 TBC1D21Q8IYX1 336 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 ANKRD13AQ8IZ07 590 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 DAW1Q8N136 415 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 DNAJB14Q8TBM8 379 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 EDEM1Q92611 657 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 CAB39LQ9H9S4 337 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 TUBA8Q9NY65 449 aaPredicted RBP19.53■□□□□ 0.72
USP48-201ENST00000308271 CD3EAPO15446 510 aaKnown RBP19.53■□□□□ 0.72
USP48-201ENST00000308271 ALOX12P18054 663 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 STX19Q8N4C7 294 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 ADAM32Q8TC27 787 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 PANX3Q96QZ0 392 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 UNC93B1Q9H1C4 597 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 DDX43Q9NXZ2 648 aaKnown RBP19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 122.4 ms