RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 C1QAP02745 245 aa18.46■□□□□ 0.54
VIM-201ENST00000224237 RHOCP08134 193 aa18.46■□□□□ 0.54
VIM-201ENST00000224237 PTPN2P17706 415 aa18.46■□□□□ 0.54
VIM-201ENST00000224237 DDX6P26196 483 aaKnown RBP eCLIP18.46■□□□□ 0.541e-5■■□□□ 13
VIM-201ENST00000224237 NPY2RP49146 381 aa18.46■□□□□ 0.54
VIM-201ENST00000224237 CRADDP78560 199 aa18.46■□□□□ 0.54
VIM-201ENST00000224237 LBRQ14739 615 aaKnown RBP18.46■□□□□ 0.54
VIM-201ENST00000224237 TMCO4Q5TGY1 634 aa18.46■□□□□ 0.54
VIM-201ENST00000224237 FAM217AQ8IXS0 508 aa18.46■□□□□ 0.54
VIM-201ENST00000224237 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.46■□□□□ 0.54
VIM-201ENST00000224237 HJURPQ8NCD3 748 aaPredicted RBP18.46■□□□□ 0.54
VIM-201ENST00000224237 SLC44A1Q8WWI5 657 aa18.46■□□□□ 0.54
VIM-201ENST00000224237 TBL1YQ9BQ87 522 aa18.46■□□□□ 0.54
VIM-201ENST00000224237 IL22Q9GZX6 179 aa18.46■□□□□ 0.54
VIM-201ENST00000224237 PDFQ9HBH1 243 aa18.46■□□□□ 0.54
VIM-201ENST00000224237 HAUS2Q9NVX0 235 aa18.46■□□□□ 0.54
VIM-201ENST00000224237 DPP7Q9UHL4 492 aa18.46■□□□□ 0.54
VIM-201ENST00000224237 SH3BP1Q9Y3L3 701 aa18.46■□□□□ 0.54
VIM-201ENST00000224237 POLBP06746 335 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 INHBAP08476 426 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 HNRNPA1P09651 372 aaKnown RBP eCLIP18.45■□□□□ 0.54
VIM-201ENST00000224237 KRT15P19012 456 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 ETFBP38117 255 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 CCR2P41597 374 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 NUMBP49757 651 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 ERVK-21P61565 698 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 GNGT1P63211 74 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 GPM6BQ13491 265 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 IL31Q6EBC2 164 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 HTR3DQ70Z44 454 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 RBM23Q86U06 439 aaKnown RBP18.45■□□□□ 0.54
VIM-201ENST00000224237 PRPF39Q86UA1 669 aaKnown RBP18.45■□□□□ 0.54
VIM-201ENST00000224237 TRABD2AQ86V40 505 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 LRRC6Q86X45 466 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 SRRM1Q8IYB3 904 aaKnown RBP18.45■□□□□ 0.54
VIM-201ENST00000224237 LEMD2Q8NC56 503 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 TTC16Q8NEE8 873 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 IPMKQ8NFU5 416 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 DCAKDQ8WVC6 231 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 TRIM56Q9BRZ2 755 aaKnown RBP18.45■□□□□ 0.54
VIM-201ENST00000224237 FSD1LQ9BXM9 530 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 VPS45Q9NRW7 570 aa18.45■□□□□ 0.54
VIM-201ENST00000224237 ALDH1A2O94788 518 aa18.44■□□□□ 0.54
VIM-201ENST00000224237 HOXD9P28356 352 aaPredicted RBP18.44■□□□□ 0.54
VIM-201ENST00000224237 GUCY1A3Q02108 690 aa18.44■□□□□ 0.54
VIM-201ENST00000224237 CRYMQ14894 314 aa18.44■□□□□ 0.54
VIM-201ENST00000224237 ZNF783Q6ZMS7 281 aa18.44■□□□□ 0.54
VIM-201ENST00000224237 ADGRD2Q7Z7M1 963 aa18.44■□□□□ 0.54
VIM-201ENST00000224237 OR7D4Q8NG98 312 aa18.44■□□□□ 0.54
VIM-201ENST00000224237 OR52K2Q8NGK3 314 aa18.44■□□□□ 0.54
VIM-201ENST00000224237 TTC17Q96AE7 1141 aa18.44■□□□□ 0.54
VIM-201ENST00000224237 IMP4Q96G21 291 aaKnown RBP18.44■□□□□ 0.54
VIM-201ENST00000224237 APOL2Q9BQE5 337 aa18.44■□□□□ 0.54
VIM-201ENST00000224237 PBX4Q9BYU1 374 aa18.44■□□□□ 0.54
VIM-201ENST00000224237 MOCS1Q9NZB8 636 aa18.44■□□□□ 0.54
VIM-201ENST00000224237 ATG2AQ2TAZ0 1938 aa18.44■□□□□ 0.54
VIM-201ENST00000224237 MAGEB16A2A368 324 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 FAM159BA6NKW6 160 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 GFRA2O00451 464 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 XYLBO75191 536 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 PIAS1O75925 651 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 ITKQ08881 620 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 SPANXN3Q5MJ09 141 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 ZNF697Q5TEC3 545 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 SLC26A11Q86WA9 606 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 CTAGE3PQ8IX95 158 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 BBS5Q8N3I7 341 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 SHKBP1Q8TBC3 707 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 SLC46A2Q9BY10 475 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 POLR1EQ9GZS1 481 aaKnown RBP18.43■□□□□ 0.54
VIM-201ENST00000224237 CFAP97Q9P2B7 532 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 ZNF180Q9UJW8 692 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 ARHGAP26Q9UNA1 814 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 HELZP42694 1942 aaKnown RBP18.43■□□□□ 0.54
VIM-201ENST00000224237 IQANK1A0A1B0GTG1 560 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 KDELR3O43731 214 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 TBL1XO60907 577 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 BRAFP15056 766 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 ADRA1AP35348 466 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 OXCT1P55809 520 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 MAXP61244 160 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 ZNF235Q14590 738 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 ARHGAP15Q53QZ3 475 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 TTC19Q6DKK2 380 aaPredicted RBP18.43■□□□□ 0.54
VIM-201ENST00000224237 CXorf57Q6NSI4 855 aaKnown RBP18.43■□□□□ 0.54
VIM-201ENST00000224237 TRMT10BQ6PF06 316 aaKnown RBP18.43■□□□□ 0.54
VIM-201ENST00000224237 CCDC117Q8IWD4 279 aaPredicted RBP18.43■□□□□ 0.54
VIM-201ENST00000224237 CPXM2Q8N436 756 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 PPM1NQ8N819 430 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 CDKL2Q92772 493 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 TCEAL4Q96EI5 215 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 TMA16Q96EY4 203 aaKnown RBP18.43■□□□□ 0.54
VIM-201ENST00000224237 MRGPRX2Q96LB1 330 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 FICDQ9BVA6 458 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 NKX2-4Q9H2Z4 354 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 ATP13A1Q9HD20 1204 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 ZDHHC7Q9NXF8 308 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 DNMT3BQ9UBC3 853 aaKnown RBP18.43■□□□□ 0.54
VIM-201ENST00000224237 RPS6KL1Q9Y6S9 549 aa18.43■□□□□ 0.54
VIM-201ENST00000224237 ERICH4A6NGS2 130 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms