RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 F5H6K3 240 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 IFNA16P05015 189 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 URODP06132 367 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 KLRC3Q07444 240 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 EFCAB12Q6NXP0 572 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 GPSM1Q86YR5 675 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 FAM118BQ9BPY3 351 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 PUS3Q9BZE2 481 aaKnown RBP14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 TTYH1Q9H313 450 aaPredicted RBP14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 FBXO44Q9H4M3 255 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 OR10H1Q9Y4A9 318 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 RBAK-RBAKDNI3L0D1 243 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 CTSEP14091 401 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 NOS2P35228 1153 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 ILF3Q12906 894 aaKnown RBP eCLIP14.12□□□□□ -0.151e-7■■□□□ 13
CCDC88A-201ENST00000263630 PPM1LQ5SGD2 360 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 HDDC3Q8N4P3 179 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 KAT5Q92993 513 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 TIMMDC1Q9NPL8 285 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 ZNF221Q9UK13 617 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 HYIQ5T013 277 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 FAM92BQ6ZTR7 304 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 PPP1R16AQ96I34 528 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 PLK4O00444 970 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 NMT1P30419 496 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 SLC45A4Q5BKX6 768 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 IL27RAQ6UWB1 636 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 FAM131AQ6UXB0 335 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 GLT6D1Q7Z4J2 308 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 EPS8L3Q8TE67 593 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 ABCC2Q92887 1545 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 LENG1Q96BZ8 264 aaPredicted RBP14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 LAMC3Q9Y6N6 1575 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 CTSHP09668 335 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 MAGEA12P43365 314 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 CUL2Q13617 745 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 FAM126AQ9BYI3 521 aaPredicted RBP14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 CIPCQ9C0C6 399 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 TRPV5Q9NQA5 729 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 KYAT3Q6YP21 454 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 ZNF548Q8NEK5 533 aaPredicted RBP14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 OR10H5Q8NGA6 315 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 FAM86C2PA6NEL3 165 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 VIL1P09327 827 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 GSTT2BP0CG30 244 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 RFX4Q33E94 735 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 HSDL1Q3SXM5 330 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 C11orf63Q6NUN7 778 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 ATL1Q8WXF7 558 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 PLEKHA1Q9HB21 404 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 RLN2P04090 185 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 SPP2Q13103 211 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 USP45Q70EL2 814 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 ZNF567Q8N184 647 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 SRFBP1Q8NEF9 429 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 CHP1Q99653 195 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 TRIM9Q9C026 710 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 QRICH1Q2TAL8 776 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 LACTB2Q53H82 288 aaPredicted RBP14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 TUBA3EQ6PEY2 450 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 KCNMB4Q86W47 210 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 GMCL1Q96IK5 515 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 SOHLH2Q9NX45 425 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 FAM240BA0A1B0GVZ2 78 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 CASKO14936 926 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 KRT36O76013 467 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 EPORP19235 508 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 SLC7A2P52569 658 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 SSTP61278 116 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 PTAR1Q7Z6K3 402 aaPredicted RBP14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 REEP2Q9BRK0 252 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 COG5Q9UP83 839 aa14.11□□□□□ -0.15
CCDC88A-201ENST00000263630 TSPAN4O14817 238 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 ATP13A4Q4VNC1 1196 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 DSELQ8IZU8 1212 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 ADSSL1Q8N142 457 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 OXNAD1Q96HP4 312 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 STRBPQ96SI9 672 aaKnown RBP14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 TNKS2Q9H2K2 1166 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 ANKZF1Q9H8Y5 726 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 CYP3A43Q9HB55 503 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 ZFYVE28Q9HCC9 887 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 PEG3Q9GZU2 1588 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 LRIG2O94898 1065 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 ITGB3P05106 788 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 STOMP27105 288 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 GSTT1P30711 240 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 CBWD6Q4V339 395 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 ZNF780BQ9Y6R6 833 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 A0A0A6YYK5 440 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 XKRYO14609 159 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 CYP4F2P78329 520 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 CYP4F3Q08477 520 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 SNAPC2Q13487 334 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 IPCEF1Q8WWN9 437 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 MTG1Q9BT17 334 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 TMEM260Q9NX78 707 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 SORCS3Q9UPU3 1222 aa14.1□□□□□ -0.15
CCDC88A-201ENST00000263630 MRASO14807 208 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms