RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 BOLA3Q53S33 107 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 C9orf64Q5T6V5 341 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 ZNF783Q6ZMS7 281 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 LEKR1Q6ZMV7 388 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 RFX8Q6ZV50 586 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 ALYREFQ86V81 257 aaKnown RBP13.68□□□□□ -0.22
VPS28-210ENST00000529182 PSTKQ8IV42 348 aaKnown RBP13.68□□□□□ -0.22
VPS28-210ENST00000529182 SH2D3CQ8N5H7 860 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 NETO2Q8NC67 525 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 ACRBPQ8NEB7 543 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 FRS2Q8WU20 508 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 PTPRN2Q92932 1015 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 SIPA1Q96FS4 1042 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 EIF3CQ99613 913 aaKnown RBP13.68□□□□□ -0.22
VPS28-210ENST00000529182 SEMA4AQ9H3S1 761 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 CATSPERBQ9H7T0 1116 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 PRDM16Q9HAZ2 1276 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 KLHL11Q9NVR0 708 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 CWC15Q9P013 229 aaKnown RBP13.68□□□□□ -0.22
VPS28-210ENST00000529182 MBD1Q9UIS9 605 aaPredicted RBP13.68□□□□□ -0.22
VPS28-210ENST00000529182 INTUQ9ULD6 942 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 CYP8B1Q9UNU6 501 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 OTOGLQ3ZCN5 2332 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 EDDM13A0A1B0GTR0 161 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 RCCD1A6NED2 376 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 RASA4BC9J798 803 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 FGF10O15520 208 aaPredicted RBP13.67□□□□□ -0.22
VPS28-210ENST00000529182 DAPK3O43293 454 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 RASA4O43374 803 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 ATP9BO43861 1147 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 BNIP3LO60238 219 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 GFRA3O60609 400 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 MTA2O94776 668 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 ERCC2P18074 760 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 RPS14P62263 151 aaKnown RBP13.67□□□□□ -0.22
VPS28-210ENST00000529182 POLD3Q15054 466 aaPredicted RBP13.67□□□□□ -0.22
VPS28-210ENST00000529182 PLK5Q496M5 336 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 Q6ZVU0 165 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 ZNF354CQ86Y25 554 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 RHOT2Q8IXI1 618 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 STK40Q8N2I9 435 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 ATP11CQ8NB49 1132 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 TEKT4Q8WW24 435 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 PRCCQ92733 491 aaPredicted RBP13.67□□□□□ -0.22
VPS28-210ENST00000529182 HMCESQ96FZ2 354 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 CELF6Q96J87 481 aaKnown RBP13.67□□□□□ -0.22
VPS28-210ENST00000529182 SPACA7Q96KW9 195 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 ACE2Q9BYF1 805 aaPredicted RBP13.67□□□□□ -0.22
VPS28-210ENST00000529182 KLC2Q9H0B6 622 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 MAGEH1Q9H213 219 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 RETREG1Q9H6L5 497 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 PCDH18Q9HCL0 1135 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 HS3ST2Q9Y278 367 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 REXO2Q9Y3B8 237 aaKnown RBP13.67□□□□□ -0.22
VPS28-210ENST00000529182 MFHAS1Q9Y4C4 1052 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 HYOU1Q9Y4L1 999 aa13.67□□□□□ -0.22
VPS28-210ENST00000529182 IGHV1OR15-9A0A0B4J2B8 117 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 TARSL2A2RTX5 802 aaKnown RBP13.66□□□□□ -0.22
VPS28-210ENST00000529182 H3BRJ5 948 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 CD160O95971 181 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 CD48P09326 243 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 ACADMP11310 421 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 AMPD1P23109 780 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 MAN1A1P33908 653 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 HTR7P34969 479 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 NOP2P46087 812 aaKnown RBP13.66□□□□□ -0.22
VPS28-210ENST00000529182 TPMTP51580 245 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 CDH6P55285 790 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 HADHQ16836 314 aaKnown RBP13.66□□□□□ -0.22
VPS28-210ENST00000529182 POLNQ7Z5Q5 900 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 MMAAQ8IVH4 418 aaKnown RBP13.66□□□□□ -0.22
VPS28-210ENST00000529182 UMODL1-AS1Q8N2C9 162 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 DCLK2Q8N568 766 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 DEFB119Q8N690 84 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 CSPG4P5Q96PW8 444 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 FAM129BQ96TA1 746 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 DUSP15Q9H1R2 295 aaPredicted RBP13.66□□□□□ -0.22
VPS28-210ENST00000529182 RSPH9Q9H1X1 276 aaPredicted RBP13.66□□□□□ -0.22
VPS28-210ENST00000529182 GRPEL1Q9HAV7 217 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 ETNK2Q9NVF9 386 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 USP36Q9P275 1121 aaKnown RBP13.66□□□□□ -0.22
VPS28-210ENST00000529182 RAB23Q9ULC3 237 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 FCF1Q9Y324 198 aaKnown RBP13.66□□□□□ -0.22
VPS28-210ENST00000529182 ABCA7Q8IZY2 2146 aa13.66□□□□□ -0.22
VPS28-210ENST00000529182 GVINP1Q7Z2Y8 2422 aa13.65□□□□□ -0.22
VPS28-210ENST00000529182 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.65□□□□□ -0.22
VPS28-210ENST00000529182 GOLGA6L6A8MZA4 724 aa13.65□□□□□ -0.22
VPS28-210ENST00000529182 ZNF217O75362 1048 aa13.65□□□□□ -0.22
VPS28-210ENST00000529182 ETFBP38117 255 aa13.65□□□□□ -0.22
VPS28-210ENST00000529182 ARL4AP40617 200 aa13.65□□□□□ -0.22
VPS28-210ENST00000529182 ARHGAP25P42331 645 aa13.65□□□□□ -0.22
VPS28-210ENST00000529182 HCAR3P49019 387 aa13.65□□□□□ -0.22
VPS28-210ENST00000529182 SERPINH1P50454 418 aaKnown RBP13.65□□□□□ -0.22
VPS28-210ENST00000529182 VASPP50552 380 aaPredicted RBP13.65□□□□□ -0.22
VPS28-210ENST00000529182 MMRN1Q13201 1228 aa13.65□□□□□ -0.22
VPS28-210ENST00000529182 DPYSQ14117 519 aa13.65□□□□□ -0.22
VPS28-210ENST00000529182 KRT81Q14533 505 aa13.65□□□□□ -0.22
VPS28-210ENST00000529182 TCEAL1Q15170 157 aa13.65□□□□□ -0.22
VPS28-210ENST00000529182 ZNF776Q68DI1 518 aaPredicted RBP13.65□□□□□ -0.22
VPS28-210ENST00000529182 RETSATQ6NUM9 610 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms