RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 RAB6CQ9H0N0 254 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 SLC40A1Q9NP59 571 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 ABLIM1O14639 778 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 SRP72O76094 671 aaKnown RBP14.29□□□□□ -0.12
SCAF4-202ENST00000399804 SUPT7LO94864 414 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 TPSB2P20231 275 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 PITX1P78337 314 aaPredicted RBP14.29□□□□□ -0.12
SCAF4-202ENST00000399804 GAD2Q05329 585 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 MTA1Q13330 715 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 TPSAB1Q15661 275 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 CYP4X1Q8N118 509 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 AGGF1Q8N302 714 aaeCLIP14.29□□□□□ -0.12
SCAF4-202ENST00000399804 PDZD8Q8NEN9 1154 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 NSL1Q96IY1 281 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 TMEM120AQ9BXJ8 343 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 EPS15L1Q9UBC2 864 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 A0A1W2PQ45 241 aaPredicted RBP14.29□□□□□ -0.12
SCAF4-202ENST00000399804 A0A1W2PQY0 241 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 GRK2P25098 689 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 SMAD3P84022 425 aaKnown RBP14.29□□□□□ -0.12
SCAF4-202ENST00000399804 ZNF280BQ86YH2 543 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 LRRC49Q8IUZ0 686 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 NAT8LQ8N9F0 302 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 SLC44A1Q8WWI5 657 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 PPWD1Q96BP3 646 aaKnown RBP14.29□□□□□ -0.12
SCAF4-202ENST00000399804 EXOC2Q96KP1 924 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 VCX3BQ9H321 246 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 UXTQ9UBK9 157 aaPredicted RBP14.29□□□□□ -0.12
SCAF4-202ENST00000399804 SUN2Q9UH99 717 aa14.29□□□□□ -0.12
SCAF4-202ENST00000399804 LRRC37AA6NMS7 1700 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 F8W8V4 182 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 ZNF623O75123 536 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 TBX18O95935 607 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 PRMT2P55345 433 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 WNT3AP56704 352 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 CRYMQ14894 314 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 QPCTQ16769 361 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 PABPC1LQ4VXU2 614 aaKnown RBP14.28□□□□□ -0.12
SCAF4-202ENST00000399804 SH2D4BQ5SQS7 431 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 UBXN11Q5T124 520 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 ANKS1BQ7Z6G8 1248 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 KCNV2Q8TDN2 545 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 KBTBD7Q8WVZ9 684 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 BTN2A3PQ96KV6 586 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 PPP1R10Q96QC0 940 aaKnown RBP14.28□□□□□ -0.12
SCAF4-202ENST00000399804 ADGRE3Q9BY15 652 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 C12orf65Q9H3J6 166 aaKnown RBP14.28□□□□□ -0.12
SCAF4-202ENST00000399804 KDM4CQ9H3R0 1056 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 GLOD4Q9HC38 313 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 RAD54BQ9Y620 910 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 SUPT3HB4E1H0 165 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 E9PAM4 449 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 SUPT3HO75486 399 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 PIRTP0C851 137 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 AKT1P31749 480 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 ARHGEF7Q14155 803 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 RBBP5Q15291 538 aaKnown RBP14.28□□□□□ -0.12
SCAF4-202ENST00000399804 MTFR1Q15390 333 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 CNGA3Q16281 694 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 TPGS1Q6ZTW0 290 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 THTPAQ9BU02 230 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 NOP53Q9NZM5 478 aaKnown RBP14.28□□□□□ -0.12
SCAF4-202ENST00000399804 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.28□□□□□ -0.12
SCAF4-202ENST00000399804 ITGBL1O95965 494 aaPredicted RBP14.28□□□□□ -0.12
SCAF4-202ENST00000399804 SIX1Q15475 284 aaPredicted RBP14.28□□□□□ -0.12
SCAF4-202ENST00000399804 PDCD2Q16342 344 aaPredicted RBP14.28□□□□□ -0.12
SCAF4-202ENST00000399804 LRRC8BQ6P9F7 803 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 SPATA22Q8NHS9 363 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 CDC26Q8NHZ8 85 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 DCUN1D1Q96GG9 259 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 RXFP1Q9HBX9 757 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 LMCD1Q9NZU5 365 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 SLC17A7Q9P2U7 560 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 CRLS1Q9UJA2 301 aa14.28□□□□□ -0.12
SCAF4-202ENST00000399804 SRRM3A6NNA2 597 aaPredicted RBP14.27□□□□□ -0.12
SCAF4-202ENST00000399804 HNRNPCL1O60812 293 aaKnown RBP14.27□□□□□ -0.12
SCAF4-202ENST00000399804 KLHL2O95198 593 aa14.27□□□□□ -0.12
SCAF4-202ENST00000399804 GRIA1P42261 906 aa14.27□□□□□ -0.12
SCAF4-202ENST00000399804 CSE1LP55060 971 aaKnown RBP14.27□□□□□ -0.12
SCAF4-202ENST00000399804 TPD52P55327 224 aaPredicted RBP14.27□□□□□ -0.12
SCAF4-202ENST00000399804 PDK4Q16654 411 aa14.27□□□□□ -0.12
SCAF4-202ENST00000399804 OTOP2Q7RTS6 562 aa14.27□□□□□ -0.12
SCAF4-202ENST00000399804 PQLC3Q8N755 202 aa14.27□□□□□ -0.12
SCAF4-202ENST00000399804 NPY6RQ99463 290 aa14.27□□□□□ -0.12
SCAF4-202ENST00000399804 RABGEF1Q9UJ41 708 aa14.27□□□□□ -0.12
SCAF4-202ENST00000399804 GJD2Q9UKL4 321 aa14.27□□□□□ -0.12
SCAF4-202ENST00000399804 PHIPQ8WWQ0 1821 aa14.27□□□□□ -0.12
SCAF4-202ENST00000399804 GNRH1P01148 92 aa14.27□□□□□ -0.12
SCAF4-202ENST00000399804 ITGA2BP08514 1039 aa14.27□□□□□ -0.12
SCAF4-202ENST00000399804 ALADP13716 330 aa14.27□□□□□ -0.12
SCAF4-202ENST00000399804 SMARCB1Q12824 385 aa14.27□□□□□ -0.12
SCAF4-202ENST00000399804 UPP1Q16831 310 aa14.27□□□□□ -0.12
SCAF4-202ENST00000399804 NCBP2-AS2Q69YL0 99 aa14.27□□□□□ -0.12
SCAF4-202ENST00000399804 SEC14L1Q92503 715 aa14.27□□□□□ -0.12
SCAF4-202ENST00000399804 USP13Q92995 863 aaPredicted RBP14.27□□□□□ -0.12
SCAF4-202ENST00000399804 FUBP3Q96I24 572 aaKnown RBP eCLIP14.27□□□□□ -0.12
SCAF4-202ENST00000399804 ADA2Q9NZK5 511 aa14.27□□□□□ -0.12
SCAF4-202ENST00000399804 CRYL1Q9Y2S2 319 aa14.27□□□□□ -0.12
SCAF4-202ENST00000399804 SKAP2O75563 359 aaPredicted RBP14.27□□□□□ -0.13
SCAF4-202ENST00000399804 MLNP12872 115 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms