RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 TYK2P29597 1187 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 SPRP35270 261 aaPredicted RBP9.22□□□□□ -0.93
TDP1-202ENST00000393452 OR1G1P47890 313 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 RASSF2P50749 326 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 MNAT1P51948 309 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 PDE1BQ01064 536 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 VARS2Q5ST30 1063 aaKnown RBP9.22□□□□□ -0.93
TDP1-202ENST00000393452 N4BP2L1Q5TBK1 243 aaPredicted RBP9.22□□□□□ -0.93
TDP1-202ENST00000393452 MBLAC2Q68D91 279 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 CCDC117Q8IWD4 279 aaPredicted RBP9.22□□□□□ -0.93
TDP1-202ENST00000393452 REM2Q8IYK8 340 aaPredicted RBP9.22□□□□□ -0.93
TDP1-202ENST00000393452 RTL3Q8N8U3 475 aaKnown RBP9.22□□□□□ -0.93
TDP1-202ENST00000393452 AGAP2Q99490 1192 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 C20orf27Q9GZN8 174 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 ELAC1Q9H777 363 aaKnown RBP9.22□□□□□ -0.93
TDP1-202ENST00000393452 TLE6Q9H808 572 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 CHRAC1Q9NRG0 131 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 NDFIP2Q9NV92 336 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 THAP1Q9NVV9 213 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 NUDT5Q9UKK9 219 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 HS3ST4Q9Y661 456 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 TET1Q8NFU7 2136 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 E9PAM4 449 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 ANXA9O76027 345 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 SLC2A3P11169 496 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 FGF3P11487 239 aaPredicted RBP9.22□□□□□ -0.93
TDP1-202ENST00000393452 CSRP3P50461 194 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 TUBP50607 506 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 CSE1LP55060 971 aaKnown RBP9.22□□□□□ -0.93
TDP1-202ENST00000393452 PCLAFQ15004 111 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 DDR2Q16832 855 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 FASTKD1Q53R41 847 aaKnown RBP9.22□□□□□ -0.93
TDP1-202ENST00000393452 FSTL4Q6MZW2 842 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 STRA8Q7Z7C7 330 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 KCNMB4Q86W47 210 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 ZNF683Q8IZ20 524 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 ARHGAP18Q8N392 663 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 DCLK2Q8N568 766 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.22□□□□□ -0.93
TDP1-202ENST00000393452 CD99L2Q8TCZ2 262 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 PPP1R2P1Q96PQ5 205 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 RAB3IPQ96QF0 476 aaPredicted RBP9.22□□□□□ -0.93
TDP1-202ENST00000393452 APOL2Q9BQE5 337 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 GLOD4Q9HC38 313 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 STARD7Q9NQZ5 370 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 FBXO6Q9NRD1 293 aaPredicted RBP9.22□□□□□ -0.93
TDP1-202ENST00000393452 UBP1Q9NZI7 540 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 PRG3Q9Y2Y8 225 aaPredicted RBP9.22□□□□□ -0.93
TDP1-202ENST00000393452 PCDHB5Q9Y5E4 795 aa9.22□□□□□ -0.93
TDP1-202ENST00000393452 MYLKQ15746 1914 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 CCDC195A0A1B0GUA6 201 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 TADA2AO75478 443 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 HAUS5O94927 633 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 TPH1P17752 444 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 NMBRP28336 390 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 GRK4P32298 578 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 SLC8A1P32418 973 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 ADRA1AP35348 466 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 GPR15P49685 360 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 USP46P62068 366 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 HTRA3P83110 453 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 STX3Q13277 289 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 MPP3Q13368 585 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 GPNMBQ14956 572 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 HSP90AA5PQ58FG0 334 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 PPM1JQ5JR12 505 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 SWT1Q5T5J6 900 aaKnown RBP9.21□□□□□ -0.93
TDP1-202ENST00000393452 PIK3R6Q5UE93 754 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 SDHAF4Q5VUM1 108 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 ICE2Q659A1 982 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 DENND5AQ6IQ26 1287 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 TIGD7Q6NT04 549 aaPredicted RBP9.21□□□□□ -0.93
TDP1-202ENST00000393452 C16orf46Q6P387 395 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 C14orf80Q86SX3 495 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 CRLF3Q8IUI8 442 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 ARID3BQ8IVW6 561 aaPredicted RBP9.21□□□□□ -0.93
TDP1-202ENST00000393452 SPATA22Q8NHS9 363 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 USP33Q8TEY7 942 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 FATE1Q969F0 183 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 PTCD3Q96EY7 689 aaKnown RBP9.21□□□□□ -0.93
TDP1-202ENST00000393452 FAM193BQ96PV7 902 aaPredicted RBP9.21□□□□□ -0.93
TDP1-202ENST00000393452 TUBB6Q9BUF5 446 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.21□□□□□ -0.93
TDP1-202ENST00000393452 NOL6Q9H6R4 1146 aaKnown RBP9.21□□□□□ -0.93
TDP1-202ENST00000393452 ZNF395Q9H8N7 513 aaPredicted RBP9.21□□□□□ -0.93
TDP1-202ENST00000393452 CD248Q9HCU0 757 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 PRDM5Q9NQX1 630 aaPredicted RBP9.21□□□□□ -0.93
TDP1-202ENST00000393452 SNX15Q9NRS6 342 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 TMEM216Q9P0N5 145 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 BAIAP2L1Q9UHR4 511 aa9.21□□□□□ -0.93
TDP1-202ENST00000393452 OR6C75A6NL08 312 aa9.21□□□□□ -0.94
TDP1-202ENST00000393452 ARVCFO00192 962 aa9.21□□□□□ -0.94
TDP1-202ENST00000393452 MT-CYBP00156 380 aaPredicted RBP9.21□□□□□ -0.94
TDP1-202ENST00000393452 ATP5BP06576 529 aaKnown RBP9.21□□□□□ -0.94
TDP1-202ENST00000393452 SELPP16109 830 aa9.21□□□□□ -0.94
TDP1-202ENST00000393452 PTPN4P29074 926 aa9.21□□□□□ -0.94
TDP1-202ENST00000393452 SERPINB8P50452 374 aa9.21□□□□□ -0.94
TDP1-202ENST00000393452 KRT72Q14CN4 511 aa9.21□□□□□ -0.94
TDP1-202ENST00000393452 LRRC8DQ7L1W4 858 aa9.21□□□□□ -0.94
TDP1-202ENST00000393452 CCDC91Q7Z6B0 441 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms