RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 KLHL28Q9NXS3 571 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 SERTAD3Q9UJW9 196 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 HEBP2Q9Y5Z4 205 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 ZNF521Q96K83 1311 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 ADH1BP00325 375 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 FGGP02679 453 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 SLURP2P0DP57 97 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 CTPS1P17812 591 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 LYPLAL1Q5VWZ2 237 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 VASH1Q7L8A9 365 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 SLC22A17Q8WUG5 538 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 EFHD1Q9BUP0 239 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 CDT1Q9H211 546 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 ELOVL6Q9H5J4 265 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 USP32Q8NFA0 1604 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 PXDNQ92626 1479 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 FAM86C2PA6NEL3 165 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 SCN2BO60939 215 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 MAPTP10636 758 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 ITPKBP27987 946 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 GRIN1Q05586 938 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 PDCD2Q16342 344 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 RESP18Q5W5W9 173 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 Q7L0L9 218 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 TMCO2Q7Z6W1 182 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 SLC9B2Q86UD5 537 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 COG1Q8WTW3 980 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 ANKRD49Q8WVL7 239 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 TMEM237Q96Q45 408 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 ACTR8Q9H981 624 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 CYP4F12Q9HCS2 524 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 VPS45Q9NRW7 570 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 ATXN2Q99700 1313 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 EDDM13A0A1B0GTR0 161 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 ENPP3O14638 875 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 CLDN11O75508 207 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 TRUB2O95900 331 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 ARSEP51690 589 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 PDIA2Q13087 525 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 TRMT10CQ7L0Y3 403 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 DEPDC4Q8N2C3 294 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 FEZF2Q8TBJ5 459 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 DRG1Q9Y295 367 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 PITPNM1O00562 1244 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 NDUFAB1O14561 156 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 FGF10O15520 208 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 ZNF862O60290 1169 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 IMPDH2P12268 514 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 ME2P23368 584 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 KCNJ2P63252 427 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 RBL2Q08999 1139 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 TRADDQ15628 312 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 SH3D19Q5HYK7 790 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 ZNF544Q6NX49 715 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 ARHGEF19Q8IW93 802 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 SCUBE3Q8IX30 993 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 SPATA20Q8TB22 786 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 MYCBPAPQ8TBZ2 947 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 ZNF669Q96BR6 464 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 CCDC138Q96M89 665 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 RIC8BQ9NVN3 520 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 A6NL46 340 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 CREB1P16220 341 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 ARF4P18085 180 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 PPP2R1BP30154 601 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 HSPA14Q0VDF9 509 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 ITGA9Q13797 1035 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 HECTD2Q5U5R9 776 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 PHLDB3Q6NSJ2 640 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 LVRNQ6Q4G3 990 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 RNF10Q8N5U6 811 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 AP1M1Q9BXS5 423 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 TNKS2Q9H2K2 1166 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 GOLPH3Q9H4A6 298 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 UBIAD1Q9Y5Z9 338 aa9.36□□□□□ -0.91
LIMCH1-202ENST00000381753 DYTNA2CJ06 578 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 B4GALT5O43286 388 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 CCNT2O60583 730 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 MATN4O95460 622 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 ABL2P42684 1182 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 SLC11A1P49279 550 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 SPIRE1Q08AE8 756 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 RAVER1Q8IY67 606 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 UBALD2Q8IYN6 164 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 CDK20Q8IZL9 346 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 TXNDC5Q8NBS9 432 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 RADILQ96JH8 1075 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 KCTD10Q9H3F6 313 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 RNF121Q9H920 327 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 INSL5Q9Y5Q6 135 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 OAS3Q9Y6K5 1087 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 CAPN14A8MX76 684 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 PDHA1P08559 390 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 PABPC1P11940 636 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 FDFT1P37268 417 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 PPP1R15BQ5SWA1 713 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 SLC30A9Q6PML9 568 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 SRLQ86TD4 932 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 FBXO15Q8NCQ5 510 aaPredicted RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms