RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 TRIM51Q9BSJ1 452 aa17.7■□□□□ 0.42
PHGDH-234ENST00000642041 FAM204AQ9H8W3 233 aa17.7■□□□□ 0.42
PHGDH-234ENST00000642041 TLR8Q9NR97 1041 aaKnown RBP17.7■□□□□ 0.42
PHGDH-234ENST00000642041 GDE1Q9NZC3 331 aa17.7■□□□□ 0.42
PHGDH-234ENST00000642041 GRHL1Q9NZI5 618 aa17.7■□□□□ 0.42
PHGDH-234ENST00000642041 VWA8A3KMH1 1905 aa17.7■□□□□ 0.42
PHGDH-234ENST00000642041 SMG1Q96Q15 3661 aaKnown RBP17.7■□□□□ 0.42
PHGDH-234ENST00000642041 LOC400499M0QZD8 3231 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 YJEFN3A6XGL0 299 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 E7ENQ6 273 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 AXIN1O15169 862 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 SASH3O75995 380 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 NUDT17P0C025 328 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 TCF4P15884 667 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 CYP2F1P24903 491 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 YWHAQP27348 245 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 ATP5DP30049 168 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 COG7P83436 770 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 NRG1Q02297 640 aaPredicted RBP17.69■□□□□ 0.42
PHGDH-234ENST00000642041 FOXC1Q12948 553 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 GAS6Q14393 721 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 PABPC1LQ4VXU2 614 aaKnown RBP17.69■□□□□ 0.42
PHGDH-234ENST00000642041 DAB2IPQ5VWQ8 1189 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 TANGO2Q6ICL3 276 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 MSANTD2Q6P1R3 559 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 DENND5BQ6ZUT9 1274 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 PPIL6Q8IXY8 311 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 ARFGAP2Q8N6H7 521 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 FBXO25Q8TCJ0 367 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 C1orf74Q96LT6 269 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 PEBP4Q96S96 227 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 LPIN3Q9BQK8 851 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 TRIM31Q9BZY9 425 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 DDIT4Q9NX09 232 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 ITPR1Q14643 2758 aa17.69■□□□□ 0.42
PHGDH-234ENST00000642041 HMGB1P1B2RPK0 211 aaPredicted RBP17.68■□□□□ 0.42
PHGDH-234ENST00000642041 H7C0C1 242 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 K7ESF4 209 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 AP3B1O00203 1094 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 FGF10O15520 208 aaPredicted RBP17.68■□□□□ 0.42
PHGDH-234ENST00000642041 IVLP07476 585 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 HAPLN1P10915 354 aaPredicted RBP17.68■□□□□ 0.42
PHGDH-234ENST00000642041 CHRNB1P11230 501 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 IL4RP24394 825 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 IVDP26440 423 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 ATP5OP48047 213 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 NOVA1P51513 510 aaKnown RBP17.68■□□□□ 0.42
PHGDH-234ENST00000642041 CDK16Q00536 496 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 CCDC6Q16204 474 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 PPP6R3Q5H9R7 873 aaPredicted RBP17.68■□□□□ 0.42
PHGDH-234ENST00000642041 DENND2CQ68D51 928 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 HIBCHQ6NVY1 386 aaPredicted RBP17.68■□□□□ 0.42
PHGDH-234ENST00000642041 PRSS55Q6UWB4 352 aaPredicted RBP17.68■□□□□ 0.42
PHGDH-234ENST00000642041 RTL10Q7L3V2 364 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 SCN4BQ8IWT1 228 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 CLEC4CQ8WTT0 213 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 UBLCP1Q8WVY7 318 aaPredicted RBP17.68■□□□□ 0.42
PHGDH-234ENST00000642041 ATG4AQ8WYN0 398 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 RNF34Q969K3 372 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 VAT1Q99536 393 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 SH3GL2Q99962 352 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 TMEM109Q9BVC6 243 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 HELZ2Q9BYK8 2649 aaKnown RBP17.68■□□□□ 0.42
PHGDH-234ENST00000642041 CATSPERBQ9H7T0 1116 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 BRD9Q9H8M2 597 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 TRPV5Q9NQA5 729 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 ABI2Q9NYB9 513 aaPredicted RBP17.68■□□□□ 0.42
PHGDH-234ENST00000642041 DNMT3BQ9UBC3 853 aaKnown RBP17.68■□□□□ 0.42
PHGDH-234ENST00000642041 AFF4Q9UHB7 1163 aaKnown RBP17.68■□□□□ 0.42
PHGDH-234ENST00000642041 R3HDM2Q9Y2K5 976 aaKnown RBP17.68■□□□□ 0.42
PHGDH-234ENST00000642041 CDY1Q9Y6F8 540 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 PTPRDP23468 1912 aa17.68■□□□□ 0.42
PHGDH-234ENST00000642041 ZSCAN5CA6NGD5 496 aaPredicted RBP17.67■□□□□ 0.42
PHGDH-234ENST00000642041 EEF2KO00418 725 aaKnown RBP17.67■□□□□ 0.42
PHGDH-234ENST00000642041 EPN2O95208 641 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 MYZAPP0CAP1 466 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 SPINK2P20155 84 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 GABPB1Q06547 395 aaPredicted RBP17.67■□□□□ 0.42
PHGDH-234ENST00000642041 IFFO1Q0D2I5 559 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 PLD1Q13393 1074 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 PAFAH1B3Q15102 231 aaKnown RBP17.67■□□□□ 0.42
PHGDH-234ENST00000642041 C6orf118Q5T5N4 469 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 SH3PXD2AQ5TCZ1 1133 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 IZUMO3Q5VZ72 239 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 HEATR6Q6AI08 1181 aaKnown RBP17.67■□□□□ 0.42
PHGDH-234ENST00000642041 RHBDF2Q6PJF5 856 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 CENPUQ71F23 418 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 ZCCHC9Q8N567 271 aaKnown RBP17.67■□□□□ 0.42
PHGDH-234ENST00000642041 ING5Q8WYH8 240 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 ZCCHC14Q8WYQ9 949 aaKnown RBP17.67■□□□□ 0.42
PHGDH-234ENST00000642041 CSPG4P5Q96PW8 444 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 TMEM209Q96SK2 561 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 CLSTN3Q9BQT9 956 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 TXLNGYQ9BZA5 131 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 KLC2Q9H0B6 622 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 TMLHEQ9NVH6 421 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 KLHL11Q9NVR0 708 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 HCFC1R1Q9NWW0 138 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 ARHGEF38Q9NXL2 777 aa17.67■□□□□ 0.42
PHGDH-234ENST00000642041 NAALADL1Q9UQQ1 740 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms