RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 MTA2O94776 668 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 PROSCO94903 275 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 DLDP09622 509 aaKnown RBP9.46□□□□□ -0.9
VPS35-206ENST00000565228 SRCP12931 536 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 PCK1P35558 622 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 CLCN6P51797 869 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 DPYSQ14117 519 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 TCEAL1Q15170 157 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 LPAL2Q16609 132 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 RABGAP1LQ5R372 815 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 ERMARDQ5T6L9 678 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 C9orf64Q5T6V5 341 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 AFMIDQ63HM1 303 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 SND1Q7KZF4 910 aaKnown RBP eCLIP9.46□□□□□ -0.9
VPS35-206ENST00000565228 KBTBD6Q86V97 674 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 CACUL1Q86Y37 369 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 DCLK2Q8N568 766 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 FAM71BQ8TC56 605 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 KCNV2Q8TDN2 545 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 LRRN4Q8WUT4 740 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 HMGB4Q8WW32 186 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 ARHGEF2Q92974 986 aaKnown RBP9.46□□□□□ -0.9
VPS35-206ENST00000565228 FAM129BQ96TA1 746 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 DESI2Q9BSY9 194 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 ACE2Q9BYF1 805 aaPredicted RBP9.46□□□□□ -0.9
VPS35-206ENST00000565228 DHX35Q9H5Z1 703 aaKnown RBP9.46□□□□□ -0.9
VPS35-206ENST00000565228 ZWILCHQ9H900 591 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 PCDH18Q9HCL0 1135 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 TMEM248Q9NWD8 314 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 KIAA1522Q9P206 1035 aaPredicted RBP9.46□□□□□ -0.9
VPS35-206ENST00000565228 CTTNBP2NLQ9P2B4 639 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 SERGEFQ9UGK8 458 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 VPS51Q9UID3 782 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 SLC8A2Q9UPR5 921 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 EPN1Q9Y6I3 576 aaPredicted RBP9.46□□□□□ -0.9
VPS35-206ENST00000565228 SLCO1B1Q9Y6L6 691 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 SCINQ9Y6U3 715 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 SHROOM3Q8TF72 1996 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.45□□□□□ -0.9
VPS35-206ENST00000565228 TMEM110-MUSTN1A8MSY1 372 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 EIF3CLB5ME19 914 aaKnown RBP9.45□□□□□ -0.9
VPS35-206ENST00000565228 C10orf142B7Z368 130 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 PROB1E7EW31 1015 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 AXIN1O15169 862 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 ATG13O75143 517 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 NDUFA10O95299 355 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 APBB3O95704 486 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 EPHX1P07099 455 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 CTSLP07711 333 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 RHOCP08134 193 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 RHOQP17081 205 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 ERCC2P18074 760 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 POLR2EP19388 210 aaKnown RBP9.45□□□□□ -0.9
VPS35-206ENST00000565228 TGM1P22735 817 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 AMPD1P23109 780 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 OR1E1P30953 314 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 MAGEA1P43355 309 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 MARCKSL1P49006 195 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 ECT2LQ008S8 904 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 GNA12Q03113 381 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 ZNF177Q13360 481 aaPredicted RBP9.45□□□□□ -0.9
VPS35-206ENST00000565228 CAMK2GQ13555 558 aaPredicted RBP9.45□□□□□ -0.9
VPS35-206ENST00000565228 MESDQ14696 234 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 EIF4HQ15056 248 aaKnown RBP9.45□□□□□ -0.9
VPS35-206ENST00000565228 DPYSL2Q16555 572 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 HSF5Q4G112 596 aaPredicted RBP9.45□□□□□ -0.9
VPS35-206ENST00000565228 EOGTQ5NDL2 527 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 TTC39BQ5VTQ0 682 aaPredicted RBP9.45□□□□□ -0.9
VPS35-206ENST00000565228 RWDD4Q6NW29 188 aaKnown RBP9.45□□□□□ -0.9
VPS35-206ENST00000565228 PPP1R2P3Q6NXS1 205 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 POLNQ7Z5Q5 900 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 SETD3Q86TU7 594 aaPredicted RBP9.45□□□□□ -0.9
VPS35-206ENST00000565228 LONP2Q86WA8 852 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 TSTD1Q8NFU3 115 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 RAPGEF5Q92565 580 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 ACDQ96AP0 544 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 TBC1D31Q96DN5 1066 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 TRIM11Q96F44 468 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 HMCESQ96FZ2 354 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 ZNF419Q96HQ0 510 aaPredicted RBP9.45□□□□□ -0.9
VPS35-206ENST00000565228 CELF6Q96J87 481 aaKnown RBP9.45□□□□□ -0.9
VPS35-206ENST00000565228 EIF3CQ99613 913 aaKnown RBP9.45□□□□□ -0.9
VPS35-206ENST00000565228 HERPUD2Q9BSE4 406 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 SLC39A8Q9C0K1 460 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 DEF6Q9H4E7 631 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 LRRC19Q9H756 370 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 GRPEL1Q9HAV7 217 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 MRPL47Q9HD33 250 aaKnown RBP9.45□□□□□ -0.9
VPS35-206ENST00000565228 ZNHIT6Q9NWK9 470 aaKnown RBP9.45□□□□□ -0.9
VPS35-206ENST00000565228 SARDHQ9UL12 918 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 GVINP1Q7Z2Y8 2422 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 LAMA1P25391 3075 aa9.45□□□□□ -0.9
VPS35-206ENST00000565228 PI4KAP42356 2102 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 IGHV1OR15-9A0A0B4J2B8 117 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 ILVBLA1L0T0 632 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 PRR23AA6NEV1 266 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 PLK4O00444 970 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 TIMM44O43615 452 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 ATP9BO43861 1147 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 BUB1BO60566 1050 aaPredicted RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms