RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 MAP3K3Q99759 626 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 HEPHQ9BQS7 1158 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 RERGLQ9H628 205 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 GPATCH2LQ9NWQ4 482 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 MORF4L1Q9UBU8 362 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 RIPK3Q9Y572 518 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 SLIT2O94813 1529 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 FOXK1P85037 733 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 ZDHHC17Q8IUH5 632 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 ZBED8Q8IZ13 594 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 TOP6BLQ8N6T0 577 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 JPH3Q8WXH2 748 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 SMPDL3BQ92485 455 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 MKL1Q969V6 931 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 SRMSQ9H3Y6 488 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 GALNT8Q9NY28 637 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 WDR91A4D1P6 747 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 CLDN4O14493 209 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 U2AF2P26368 475 aaKnown RBP eCLIP9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 SKIV2L2P42285 1042 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 DR1Q01658 176 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 NECTIN1Q15223 517 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 C17orf99Q6UX52 265 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 CHST15Q7LFX5 561 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 IGDCC4Q8TDY8 1250 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 SLC5A5Q92911 643 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 SMARCD2Q92925 531 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 GFM1Q96RP9 751 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 SPATA9Q9BWV2 254 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 OSBPL10Q9BXB5 764 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 FOXP3Q9BZS1 431 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 TBC1D17Q9HA65 648 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 INTUQ9ULD6 942 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 PCDHA13Q9Y5I0 950 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 RASA4BC9J798 803 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 RASA4O43374 803 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 TRAPPC6AO75865 159 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 LDOC1O95751 146 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 HIST1H2ABP04908 130 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 RHOP08100 348 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 TNFSF9P41273 254 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 RASIP1Q5U651 963 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 TTC39BQ5VTQ0 682 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 HIST3H2AQ7L7L0 130 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 VN1R5Q7Z5H4 357 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 UNC93AQ86WB7 457 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 CFAP52Q8N1V2 620 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 CYP2W1Q8TAV3 490 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 HIST1H2ACQ93077 130 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 SGSM3Q96HU1 749 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 DESI2Q9BSY9 194 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 Q9H521 79 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 PDE7BQ9NP56 450 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 SYBUQ9NX95 663 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 H3BNH8 94 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 C1RP00736 705 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 MAPK1P28482 360 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 HSPA9P38646 679 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 RARRES1P49788 294 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 GATMP50440 423 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 VAC14Q08AM6 782 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 SH3BP5LQ7L8J4 393 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 ZNF579Q8NAF0 562 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 ZBTB45Q96K62 511 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 C17orf80Q9BSJ5 609 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 KCNK4Q9NYG8 393 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 GPR34Q9UPC5 381 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 HNF4AP41235 474 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 NUP107P57740 925 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 SIM1P81133 766 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 IL9RQ01113 521 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 LCA5Q86VQ0 697 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 ADCY4Q8NFM4 1077 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 PMEPA1Q969W9 287 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 MOCOSQ96EN8 888 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 QRFPRQ96P65 431 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 RIOX1Q9H6W3 641 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 ASB8Q9H765 288 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 GOLGA2P5Q9HBQ8 144 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 ABCB8Q9NUT2 735 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 C19orf25Q9UFG5 118 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 H0Y858 1186 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 KPNA5O15131 536 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 VEGFDO43915 354 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 CDC40O60508 579 aaKnown RBP eCLIP9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 MICAL2O94851 1124 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 GLRA2P23416 452 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 CYP2F1P24903 491 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 NTSP30990 170 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 TOB2Q14106 344 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 KRT31Q15323 416 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 LRRC26Q2I0M4 334 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 KLHL38Q2WGJ6 581 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 FRS2Q8WU20 508 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 ADI1Q9BV57 179 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 NIFKQ9BYG3 293 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 WNT8AQ9H1J5 351 aa9.37□□□□□ -0.91
LIMCH1-202ENST00000381753 SPTLC3Q9NUV7 552 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms