RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 RBM22Q9NW64 420 aaKnown RBP eCLIP19.64■□□□□ 0.731e-8■■■■■ 30.1
USP48-201ENST00000308271 TPRKBQ9Y3C4 175 aa19.64■□□□□ 0.73
USP48-201ENST00000308271 LRCH4O75427 683 aa19.64■□□□□ 0.73
USP48-201ENST00000308271 FKBP1AP62942 108 aaKnown RBP19.64■□□□□ 0.73
USP48-201ENST00000308271 FAM9CQ8IZT9 166 aa19.64■□□□□ 0.73
USP48-201ENST00000308271 EID3Q8N140 333 aa19.64■□□□□ 0.73
USP48-201ENST00000308271 SERAC1Q96JX3 654 aa19.64■□□□□ 0.73
USP48-201ENST00000308271 CDHR5Q9HBB8 845 aa19.64■□□□□ 0.73
USP48-201ENST00000308271 CYB561D2O14569 222 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 TPSB2P20231 275 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 AQP4P55087 323 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 TPSAB1Q15661 275 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 FBXO47Q5MNV8 452 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 DEPDC1Q5TB30 811 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 MICALL2Q8IY33 904 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 SYT15Q9BQS2 421 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 A0A087WZ62 844 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 ZSCAN9O15535 394 aaPredicted RBP19.63■□□□□ 0.73
USP48-201ENST00000308271 GLP2RO95838 553 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 CCNA2P20248 432 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 PTPN20Q4JDL3 420 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 SATL1Q86VE3 508 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 CPNE8Q86YQ8 564 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 C8orf59Q8N0T1 100 aaPredicted RBP19.63■□□□□ 0.73
USP48-201ENST00000308271 FAM47BQ8NA70 645 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 VPS37AQ8NEZ2 397 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 LRRC15Q8TF66 581 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 FDXACB1Q9BRP7 624 aaPredicted RBP19.63■□□□□ 0.73
USP48-201ENST00000308271 PIF1Q9H611 641 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 RRN3P2A6NIE6 340 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 SLC2A3P11169 496 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 MLNP12872 115 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 RAB27AP51159 221 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 PLK1P53350 603 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 RAD21L1Q9H4I0 556 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 POMPQ9Y244 141 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 PLIN4Q96Q06 1357 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 CCDC154A6NI56 674 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 NKRFO15226 690 aaKnown RBP eCLIP19.63■□□□□ 0.73
USP48-201ENST00000308271 LGR5O75473 907 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 CCDC166P0CW27 439 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 ETFBP38117 255 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 TKTL1P51854 596 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 VAC14Q08AM6 782 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 BNIP2Q12982 314 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 TMEM63BQ5T3F8 832 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 GPR107Q5VW38 600 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 ANKS6Q68DC2 871 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 PTAR1Q7Z6K3 402 aaPredicted RBP19.63■□□□□ 0.73
USP48-201ENST00000308271 ZC3H3Q8IXZ2 948 aaKnown RBP19.63■□□□□ 0.73
USP48-201ENST00000308271 C7orf43Q8WVR3 580 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 CPB2Q96IY4 423 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 FAM84AQ96KN4 292 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 TUBGCP5Q96RT8 1024 aa19.63■□□□□ 0.73
USP48-201ENST00000308271 HOXB8P17481 243 aaPredicted RBP19.62■□□□□ 0.73
USP48-201ENST00000308271 ZNF135P52742 658 aaPredicted RBP19.62■□□□□ 0.73
USP48-201ENST00000308271 TAF5Q15542 800 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 FASTKD5Q7L8L6 764 aaKnown RBP19.62■□□□□ 0.73
USP48-201ENST00000308271 DSELQ8IZU8 1212 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 IL31RAQ8NI17 732 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 RMND5AQ9H871 391 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 LRFN2Q9ULH4 789 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 IGLV3-22A0A075B6J6 115 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 RGS5O15539 181 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 ZNF862O60290 1169 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 CDH3P22223 829 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 CCT8P50990 548 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 NEK3P51956 506 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 PRKD1Q15139 912 aaPredicted RBP19.62■□□□□ 0.73
USP48-201ENST00000308271 MAPK11Q15759 364 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 ZC3H12AQ5D1E8 599 aaKnown RBP19.62■□□□□ 0.73
USP48-201ENST00000308271 DACT2Q5SW24 774 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 PGAM4Q8N0Y7 254 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 STK39Q9UEW8 545 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 HLA-DPA1P20036 260 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 PSEN1P49768 467 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 OAZ1P54368 228 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 ADIGQ0VDE8 80 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 ZRANB3Q5FWF4 1079 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 TMC5Q6UXY8 1006 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 CERS5Q8N5B7 392 aa19.62■□□□□ 0.73
USP48-201ENST00000308271 PTGES3LE9PB15 166 aa19.61■□□□□ 0.73
USP48-201ENST00000308271 MED26O95402 600 aa19.61■□□□□ 0.73
USP48-201ENST00000308271 C4BPAP04003 597 aaKnown RBP19.61■□□□□ 0.73
USP48-201ENST00000308271 LBPP18428 481 aa19.61■□□□□ 0.73
USP48-201ENST00000308271 ADSSP30520 456 aa19.61■□□□□ 0.73
USP48-201ENST00000308271 KHDRBS1Q07666 443 aaKnown RBP eCLIP19.61■□□□□ 0.732e-9■■■■□ 23.5
USP48-201ENST00000308271 UGCGQ16739 394 aa19.61■□□□□ 0.73
USP48-201ENST00000308271 ZC3H12BQ5HYM0 836 aaKnown RBP19.61■□□□□ 0.73
USP48-201ENST00000308271 SCAF8Q9UPN6 1271 aaKnown RBP19.61■□□□□ 0.73
USP48-201ENST00000308271 PGK2P07205 417 aa19.61■□□□□ 0.73
USP48-201ENST00000308271 ENPEPQ07075 957 aa19.61■□□□□ 0.73
USP48-201ENST00000308271 GRIK3Q13003 919 aa19.61■□□□□ 0.73
USP48-201ENST00000308271 TOP3AQ13472 1001 aaPredicted RBP19.61■□□□□ 0.73
USP48-201ENST00000308271 CMC1Q7Z7K0 106 aa19.61■□□□□ 0.73
USP48-201ENST00000308271 ITFG1Q8TB96 612 aa19.61■□□□□ 0.73
USP48-201ENST00000308271 USE1Q9NZ43 259 aa19.61■□□□□ 0.73
USP48-201ENST00000308271 CAB39Q9Y376 341 aaPredicted RBP19.61■□□□□ 0.73
USP48-201ENST00000308271 DHRS12A0PJE2 317 aa19.61■□□□□ 0.73
USP48-201ENST00000308271 STX7O15400 261 aaKnown RBP19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms