RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 TRIM16O95361 564 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 ADH1BP00325 375 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 PDGFRAP16234 1089 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 CD27P26842 260 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 CDH4P55283 916 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 RNASE9P60153 205 aaKnown RBP19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 ELAVL3Q14576 367 aaKnown RBP19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 CXorf57Q6NSI4 855 aaKnown RBP19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 XYLT1Q86Y38 959 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 ANKRD20A12PQ8NF67 263 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 SNX19Q92543 992 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 PTPRN2Q92932 1015 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 IGSF8Q969P0 613 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 BIRC7Q96CA5 298 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 RPL10LQ96L21 214 aaKnown RBP19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 C1orf74Q96LT6 269 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 FAM129BQ96TA1 746 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 OMDQ99983 421 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 FEM1AQ9BSK4 669 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 MTG2Q9H4K7 406 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 PIGVQ9NUD9 493 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 ANO10Q9NW15 660 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 TAB2Q9NYJ8 693 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 VANGL2Q9ULK5 521 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 LRRC72A6NJI9 287 aa19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 C5AR1P21730 350 aa19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 MZF1P28698 734 aaPredicted RBP19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 SLC8A1P32418 973 aa19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 GRIA4P48058 902 aa19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 SIM1P81133 766 aaPredicted RBP19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 DEUP1Q05D60 604 aa19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 FOXC1Q12948 553 aa19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 KRT31Q15323 416 aa19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 FAM102AQ5T9C2 384 aaPredicted RBP19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 SASS6Q6UVJ0 657 aa19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 DSG4Q86SJ6 1040 aa19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 NOP9Q86U38 636 aaKnown RBP19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 MMAAQ8IVH4 418 aaKnown RBP19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 OR2I1PQ8NGU4 316 aa19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 EPS8L1Q8TE68 723 aa19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 VPS16Q9H269 839 aa19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 GAREM1Q9H706 876 aa19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 SLC25A13Q9UJS0 675 aa19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 WASF3Q9UPY6 502 aa19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 TBC1D30Q9Y2I9 924 aa19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 PCDHB9Q9Y5E1 797 aa19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 PCDHGB2Q9Y5G2 931 aa19.63■□□□□ 0.73
CCDC28A-203ENST00000617445 KMT2BQ9UMN6 2715 aaPredicted RBP19.62■□□□□ 0.73
CCDC28A-203ENST00000617445 MID1O15344 667 aa19.62■□□□□ 0.73
CCDC28A-203ENST00000617445 FSBPO95073 299 aa19.62■□□□□ 0.73
CCDC28A-203ENST00000617445 GOT1P17174 413 aa19.62■□□□□ 0.73
CCDC28A-203ENST00000617445 SULT1E1P49888 294 aa19.62■□□□□ 0.73
CCDC28A-203ENST00000617445 TAF3Q5VWG9 929 aa19.62■□□□□ 0.73
CCDC28A-203ENST00000617445 KIAA0895LQ68EN5 471 aa19.62■□□□□ 0.73
CCDC28A-203ENST00000617445 LRRC31Q6UY01 552 aa19.62■□□□□ 0.73
CCDC28A-203ENST00000617445 CIR1Q86X95 450 aaPredicted RBP19.62■□□□□ 0.73
CCDC28A-203ENST00000617445 OR2T34Q8NGX1 318 aa19.62■□□□□ 0.73
CCDC28A-203ENST00000617445 GPT2Q8TD30 523 aa19.62■□□□□ 0.73
CCDC28A-203ENST00000617445 ALG14Q96F25 216 aa19.62■□□□□ 0.73
CCDC28A-203ENST00000617445 SPAG5Q96R06 1193 aa19.62■□□□□ 0.73
CCDC28A-203ENST00000617445 TKTL2Q9H0I9 626 aa19.62■□□□□ 0.73
CCDC28A-203ENST00000617445 SIK2Q9H0K1 926 aa19.62■□□□□ 0.73
CCDC28A-203ENST00000617445 NEUROG2Q9H2A3 272 aa19.62■□□□□ 0.73
CCDC28A-203ENST00000617445 GANQ9H2C0 597 aa19.62■□□□□ 0.73
CCDC28A-203ENST00000617445 ATP9BO43861 1147 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 ADCY5O95622 1261 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 CSNK1EP49674 416 aaKnown RBP19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 GALCP54803 685 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 NOMO3P69849 1222 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 KRT83P78385 493 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 CENPCQ03188 943 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 SUZ12Q15022 739 aaKnown RBP19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 ST3GAL2Q16842 350 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 ZNF423Q2M1K9 1284 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 HLA-BQ31612 363 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 OTUD1Q5VV17 481 aaPredicted RBP19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 FAM46CQ5VWP2 391 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 STK40Q8N2I9 435 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 FRS2Q8WU20 508 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 SKA1Q96BD8 255 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 HAPLN3Q96S86 360 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 TM9SF3Q9HD45 589 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 FANCLQ9NW38 375 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 TMEM59LQ9UK28 342 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 VPS28Q9UK41 221 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 OR51B4Q9Y5P0 310 aa19.61■□□□□ 0.73
CCDC28A-203ENST00000617445 NYNRINQ9P2P1 1898 aaKnown RBP19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 SPAARA0A1B0GVQ0 90 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 A0A1B0GVT2 93 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 A0A1W2PP55 124 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 A0A1W2PPC4 97 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 DRGXA6NNA5 263 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 ALOX15BO15296 676 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 SH3BP5O60239 455 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 DFNA5O60443 496 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 RNASEH2AO75792 299 aaKnown RBP19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 MMEP08473 750 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 SOX5P35711 763 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 STK19P49842 368 aaPredicted RBP19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 CCR5P51681 352 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms