RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 FNIP1Q8TF40 1166 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 RPL10LQ96L21 214 aaKnown RBP9.49□□□□□ -0.89
VPS35-206ENST00000565228 TPSD1Q9BZJ3 242 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 MKRN2Q9H000 416 aaKnown RBP9.49□□□□□ -0.89
VPS35-206ENST00000565228 GOLPH3Q9H4A6 298 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 ETNK2Q9NVF9 386 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 OR12D3Q9UGF7 316 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 MBD1Q9UIS9 605 aaPredicted RBP9.49□□□□□ -0.89
VPS35-206ENST00000565228 HYOU1Q9Y4L1 999 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 STON1Q9Y6Q2 735 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 DUSP10Q9Y6W6 482 aa9.49□□□□□ -0.89
VPS35-206ENST00000565228 TNRC6BQ9UPQ9 1833 aaKnown RBP9.49□□□□□ -0.89
VPS35-206ENST00000565228 A0A1B0GVM2 712 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 TCAF2A6NFQ2 919 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 K7ERQ8 282 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 ZNF821O75541 412 aaPredicted RBP9.48□□□□□ -0.89
VPS35-206ENST00000565228 CYBBP04839 570 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 TMEM253P0C7T8 217 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 MYBL1P10243 752 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 RARAP10276 462 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 SLC2A3P11169 496 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 NDUFV2P19404 249 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 NTSR1P30989 418 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 HOXA6P31267 233 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 L1CAMP32004 1257 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 NBL1P41271 181 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 CCR3P51677 355 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 PTPN5P54829 565 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 CDH4P55283 916 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 SMTNL2Q2TAL5 461 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 ZNF528Q3MIS6 628 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 RNF219Q5W0B1 726 aaPredicted RBP9.48□□□□□ -0.89
VPS35-206ENST00000565228 ASCL5Q7RTU5 278 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 SLFN11Q7Z7L1 901 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 WDR5BQ86VZ2 330 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 FAM160A2Q8N612 972 aaPredicted RBP9.48□□□□□ -0.89
VPS35-206ENST00000565228 NPWQ8N729 165 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 NIPA2Q8N8Q9 360 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 SLC35G2Q8TBE7 412 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 ZNF564Q8TBZ8 553 aaPredicted RBP9.48□□□□□ -0.89
VPS35-206ENST00000565228 FRS2Q8WU20 508 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 RLN3Q8WXF3 142 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 PANX2Q96RD6 677 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 FEM1AQ9BSK4 669 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 IRX2Q9BZI1 471 aaPredicted RBP9.48□□□□□ -0.89
VPS35-206ENST00000565228 CIPCQ9C0C6 399 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 LACRTQ9GZZ8 138 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 PPARGC1AQ9UBK2 798 aaKnown RBP9.48□□□□□ -0.89
VPS35-206ENST00000565228 ANAPC7Q9UJX3 599 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 EP300Q09472 2414 aaPredicted RBP9.48□□□□□ -0.89
VPS35-206ENST00000565228 RIF1Q5UIP0 2472 aaKnown RBP9.48□□□□□ -0.89
VPS35-206ENST00000565228 THADAQ6YHU6 1953 aa9.48□□□□□ -0.89
VPS35-206ENST00000565228 TCRBV21S2A2A0A5A6 115 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 H0Y626 953 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 SMAD6O43541 496 aaKnown RBP9.47□□□□□ -0.89
VPS35-206ENST00000565228 AKR1B10O60218 316 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 H2AFZP0C0S5 128 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 C7P10643 843 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 HOXB2P14652 356 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 GOT1P17174 413 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 ARF5P84085 180 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 MMRN1Q13201 1228 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 CDH18Q13634 790 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 MAP7D1Q3KQU3 841 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 ANO7Q6IWH7 933 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 LINGO4Q6UY18 593 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 LEKR1Q6ZMV7 388 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 ARHGAP36Q6ZRI8 547 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 H2AFVQ71UI9 128 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 ARHGAP12Q8IWW6 846 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 CHPFQ8IZ52 775 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 AHI1Q8N157 1196 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 WFIKKN2Q8TEU8 576 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 TSC1Q92574 1164 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 ATOH1Q92858 354 aaPredicted RBP9.47□□□□□ -0.89
VPS35-206ENST00000565228 PTPRN2Q92932 1015 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 MRGPRX1Q96LB2 322 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 CCDC42Q96M95 316 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 NSMCE3Q96MG7 304 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 DDX50Q9BQ39 737 aaKnown RBP9.47□□□□□ -0.89
VPS35-206ENST00000565228 IER2Q9BTL4 223 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 ZYG11BQ9C0D3 744 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 PRSS16Q9NQE7 514 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 KLHL11Q9NVR0 708 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 ZSCAN32Q9NX65 697 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 CWC15Q9P013 229 aaKnown RBP9.47□□□□□ -0.89
VPS35-206ENST00000565228 TRIM10Q9UDY6 481 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 SLC12A6Q9UHW9 1150 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 DNAI1Q9UI46 699 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 USP18Q9UMW8 372 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 AP4E1Q9UPM8 1137 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 ERVW-1Q9UQF0 538 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 PCDHA13Q9Y5I0 950 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 EPG5Q9HCE0 2579 aa9.47□□□□□ -0.89
VPS35-206ENST00000565228 FAM186AA6NE01 2351 aa9.46□□□□□ -0.89
VPS35-206ENST00000565228 C3orf70A6NLC5 250 aaPredicted RBP9.46□□□□□ -0.9
VPS35-206ENST00000565228 WASH4PA8MWX3 477 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 CREB3O43889 395 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 SIN3BO75182 1162 aa9.46□□□□□ -0.9
VPS35-206ENST00000565228 CLDN11O75508 207 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms