RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 KCNMA1Q12791 1236 aa3.34□□□□□ -1.87
SMARCB1-209ENST00000635578 KRI1Q8N9T8 703 aaKnown RBP3.34□□□□□ -1.87
SMARCB1-209ENST00000635578 PPFIA3O75145 1194 aa3.33□□□□□ -1.88
SMARCB1-209ENST00000635578 VARSP26640 1264 aaKnown RBP3.33□□□□□ -1.88
SMARCB1-209ENST00000635578 CTHP32929 405 aa3.33□□□□□ -1.88
SMARCB1-209ENST00000635578 KCNH2Q12809 1159 aa3.33□□□□□ -1.88
SMARCB1-209ENST00000635578 PTPRNQ16849 979 aa3.33□□□□□ -1.88
SMARCB1-209ENST00000635578 PRR7Q8TB68 274 aa3.33□□□□□ -1.88
SMARCB1-209ENST00000635578 FAM174AQ8TBP5 190 aa3.33□□□□□ -1.88
SMARCB1-209ENST00000635578 CCDC102AQ96A19 550 aa3.33□□□□□ -1.88
SMARCB1-209ENST00000635578 ITPKCQ96DU7 683 aa3.33□□□□□ -1.88
SMARCB1-209ENST00000635578 CNTNAP3BQ96NU0 1288 aa3.33□□□□□ -1.88
SMARCB1-209ENST00000635578 CNTNAP3Q9BZ76 1288 aa3.33□□□□□ -1.88
SMARCB1-209ENST00000635578 GPCPD1Q9NPB8 672 aa3.33□□□□□ -1.88
SMARCB1-209ENST00000635578 FAM217BQ9NTX9 383 aaPredicted RBP3.33□□□□□ -1.88
SMARCB1-209ENST00000635578 EVA1BQ9NVM1 165 aa3.33□□□□□ -1.88
SMARCB1-209ENST00000635578 UPP2O95045 317 aa3.32□□□□□ -1.88
SMARCB1-209ENST00000635578 NR3C2P08235 984 aa3.32□□□□□ -1.88
SMARCB1-209ENST00000635578 NDUFV2P19404 249 aa3.32□□□□□ -1.88
SMARCB1-209ENST00000635578 CLCN1P35523 988 aa3.32□□□□□ -1.88
SMARCB1-209ENST00000635578 GPAT2Q6NUI2 795 aa3.32□□□□□ -1.88
SMARCB1-209ENST00000635578 FOXJ1Q92949 421 aa3.32□□□□□ -1.88
SMARCB1-209ENST00000635578 KLF16Q9BXK1 252 aaPredicted RBP3.32□□□□□ -1.88
SMARCB1-209ENST00000635578 MINK1Q8N4C8 1332 aaPredicted RBP3.31□□□□□ -1.88
SMARCB1-209ENST00000635578 MOXD2PA6NHM9 499 aa3.31□□□□□ -1.88
SMARCB1-209ENST00000635578 RNF225M0QZC1 329 aaPredicted RBP3.31□□□□□ -1.88
SMARCB1-209ENST00000635578 KRT76Q01546 638 aa3.31□□□□□ -1.88
SMARCB1-209ENST00000635578 AGERQ15109 404 aa3.31□□□□□ -1.88
SMARCB1-209ENST00000635578 LINC00528Q8N1L1 170 aa3.31□□□□□ -1.88
SMARCB1-209ENST00000635578 GPR161Q8N6U8 529 aaKnown RBP3.31□□□□□ -1.88
SMARCB1-209ENST00000635578 DNMT3LQ9UJW3 386 aa3.31□□□□□ -1.88
SMARCB1-209ENST00000635578 ADAMTS8Q9UP79 889 aa3.31□□□□□ -1.88
SMARCB1-209ENST00000635578 IRS1P35568 1242 aa3.3□□□□□ -1.88
SMARCB1-209ENST00000635578 SVOPQ8N4V2 548 aa3.3□□□□□ -1.88
SMARCB1-209ENST00000635578 MPNDQ8N594 471 aa3.3□□□□□ -1.88
SMARCB1-209ENST00000635578 SPIRE2Q8WWL2 714 aa3.3□□□□□ -1.88
SMARCB1-209ENST00000635578 COL25A1Q9BXS0 654 aaPredicted RBP3.3□□□□□ -1.88
SMARCB1-209ENST00000635578 MAP10Q9P2G4 905 aa3.3□□□□□ -1.88
SMARCB1-209ENST00000635578 FIGNL2A6NMB9 653 aa3.29□□□□□ -1.88
SMARCB1-209ENST00000635578 FSHRP23945 695 aa3.29□□□□□ -1.88
SMARCB1-209ENST00000635578 MTMR2Q13614 643 aa3.29□□□□□ -1.88
SMARCB1-209ENST00000635578 RNFT1Q5M7Z0 435 aa3.29□□□□□ -1.88
SMARCB1-209ENST00000635578 MEIOBQ8N635 442 aa3.29□□□□□ -1.88
SMARCB1-209ENST00000635578 WHAMMQ8TF30 809 aa3.29□□□□□ -1.88
SMARCB1-209ENST00000635578 CDK15Q96Q40 435 aa3.29□□□□□ -1.88
SMARCB1-209ENST00000635578 SOS2Q07890 1332 aaPredicted RBP3.28□□□□□ -1.88
SMARCB1-209ENST00000635578 TULP1O00294 542 aaPredicted RBP3.28□□□□□ -1.88
SMARCB1-209ENST00000635578 SPTLC1O15269 473 aa3.28□□□□□ -1.88
SMARCB1-209ENST00000635578 SSTR3P32745 418 aaPredicted RBP3.28□□□□□ -1.88
SMARCB1-209ENST00000635578 GRM5P41594 1212 aa3.28□□□□□ -1.88
SMARCB1-209ENST00000635578 PTSQ03393 145 aa3.28□□□□□ -1.88
SMARCB1-209ENST00000635578 NR5A1Q13285 461 aa3.28□□□□□ -1.88
SMARCB1-209ENST00000635578 TTLL12Q14166 644 aaPredicted RBP3.28□□□□□ -1.88
SMARCB1-209ENST00000635578 ZNF800Q2TB10 664 aaPredicted RBP eCLIP3.28□□□□□ -1.88
SMARCB1-209ENST00000635578 C4orf48Q5BLP8 95 aa3.28□□□□□ -1.88
SMARCB1-209ENST00000635578 ZNF385CQ66K41 422 aaPredicted RBP3.28□□□□□ -1.88
SMARCB1-209ENST00000635578 CDC14CA4D256 554 aa3.27□□□□□ -1.89
SMARCB1-209ENST00000635578 SPDYE5A6NIY4 337 aa3.27□□□□□ -1.89
SMARCB1-209ENST00000635578 TTLL8A6PVC2 850 aa3.27□□□□□ -1.89
SMARCB1-209ENST00000635578 CFAP99D6REC4 459 aa3.27□□□□□ -1.89
SMARCB1-209ENST00000635578 MARSP56192 900 aaKnown RBP3.27□□□□□ -1.89
SMARCB1-209ENST00000635578 DESI1Q6ICB0 168 aa3.27□□□□□ -1.89
SMARCB1-209ENST00000635578 LYPD8Q6UX82 237 aa3.27□□□□□ -1.89
SMARCB1-209ENST00000635578 CCDC155Q8N6L0 562 aa3.27□□□□□ -1.89
SMARCB1-209ENST00000635578 TSC1Q92574 1164 aa3.27□□□□□ -1.89
SMARCB1-209ENST00000635578 TSEN34Q9BSV6 310 aaKnown RBP3.27□□□□□ -1.89
SMARCB1-209ENST00000635578 DNMT3AQ9Y6K1 912 aaPredicted RBP3.27□□□□□ -1.89
SMARCB1-209ENST00000635578 MAGEB6P1A0A0J9YX57 407 aa3.26□□□□□ -1.89
SMARCB1-209ENST00000635578 CSPP1Q1MSJ5 1256 aa3.26□□□□□ -1.89
SMARCB1-209ENST00000635578 XP32Q5T750 250 aa3.26□□□□□ -1.89
SMARCB1-209ENST00000635578 BPHLQ86WA6 291 aaPredicted RBP3.26□□□□□ -1.89
SMARCB1-209ENST00000635578 VWA5B2Q8N398 1253 aa3.26□□□□□ -1.89
SMARCB1-209ENST00000635578 PCDHB15Q9Y5E8 787 aa3.26□□□□□ -1.89
SMARCB1-209ENST00000635578 PER1O15534 1290 aaPredicted RBP3.25□□□□□ -1.89
SMARCB1-209ENST00000635578 F12P00748 615 aaPredicted RBP3.25□□□□□ -1.89
SMARCB1-209ENST00000635578 CBLBQ13191 982 aa3.25□□□□□ -1.89
SMARCB1-209ENST00000635578 VASH1Q7L8A9 365 aaPredicted RBP3.25□□□□□ -1.89
SMARCB1-209ENST00000635578 CABLES1Q8TDN4 633 aa3.25□□□□□ -1.89
SMARCB1-209ENST00000635578 BEGAINQ9BUH8 593 aa3.25□□□□□ -1.89
SMARCB1-209ENST00000635578 CARD14Q9BXL6 1004 aa3.25□□□□□ -1.89
SMARCB1-209ENST00000635578 IGHA1P01876 353 aa3.24□□□□□ -1.89
SMARCB1-209ENST00000635578 ITGA6P23229 1130 aa3.24□□□□□ -1.89
SMARCB1-209ENST00000635578 RSBN1LQ6PCB5 846 aaPredicted RBP3.24□□□□□ -1.89
SMARCB1-209ENST00000635578 GIGYF2Q6Y7W6 1299 aaKnown RBP3.24□□□□□ -1.89
SMARCB1-209ENST00000635578 CCDC116Q8IYX3 515 aa3.24□□□□□ -1.89
SMARCB1-209ENST00000635578 AGBL1Q96MI9 1066 aa3.24□□□□□ -1.89
SMARCB1-209ENST00000635578 TBC1D2Q9BYX2 928 aa3.24□□□□□ -1.89
SMARCB1-209ENST00000635578 EMILIN1Q9Y6C2 1016 aa3.24□□□□□ -1.89
SMARCB1-209ENST00000635578 ARHGEF15O94989 841 aa3.23□□□□□ -1.89
SMARCB1-209ENST00000635578 ADAMTS2O95450 1211 aa3.23□□□□□ -1.89
SMARCB1-209ENST00000635578 SLURP2P0DP57 97 aa3.23□□□□□ -1.89
SMARCB1-209ENST00000635578 HRCP23327 699 aa3.23□□□□□ -1.89
SMARCB1-209ENST00000635578 CTSOP43234 321 aaPredicted RBP3.23□□□□□ -1.89
SMARCB1-209ENST00000635578 PLCB2Q00722 1185 aa3.23□□□□□ -1.89
SMARCB1-209ENST00000635578 RELBQ01201 579 aa3.23□□□□□ -1.89
SMARCB1-209ENST00000635578 MAP3K10Q02779 954 aa3.23□□□□□ -1.89
SMARCB1-209ENST00000635578 PPP1R26Q5T8A7 1209 aaPredicted RBP3.23□□□□□ -1.89
SMARCB1-209ENST00000635578 KANK3Q6NY19 840 aa3.23□□□□□ -1.89
SMARCB1-209ENST00000635578 SV2AQ7L0J3 742 aa3.23□□□□□ -1.89
SMARCB1-209ENST00000635578 NANOS1Q8WY41 292 aaKnown RBP3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms