RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 CLIP2Q9UDT6 1046 aa6.01□□□□□ -1.45
VPS13D-214ENST00000620676 PHACTR2O75167 634 aa6.01□□□□□ -1.45
VPS13D-214ENST00000620676 PTPN14Q15678 1187 aa6.01□□□□□ -1.45
VPS13D-214ENST00000620676 MICALL1Q8N3F8 863 aa6.01□□□□□ -1.45
VPS13D-214ENST00000620676 UBXN4Q92575 508 aa6.01□□□□□ -1.45
VPS13D-214ENST00000620676 CNTLNQ9NXG0 1405 aa6.01□□□□□ -1.45
VPS13D-214ENST00000620676 URI1O94763 535 aaPredicted RBP6.01□□□□□ -1.45
VPS13D-214ENST00000620676 GTF2E1P29083 439 aaPredicted RBP6.01□□□□□ -1.45
VPS13D-214ENST00000620676 RABEP1Q15276 862 aa6.01□□□□□ -1.45
VPS13D-214ENST00000620676 OGFRQ9NZT2 677 aa6.01□□□□□ -1.45
VPS13D-214ENST00000620676 SECISBP2LQ93073 1101 aaKnown RBP6□□□□□ -1.45
VPS13D-214ENST00000620676 MCM6Q14566 821 aa6□□□□□ -1.45
VPS13D-214ENST00000620676 VPS18Q9P253 973 aa6□□□□□ -1.45
VPS13D-214ENST00000620676 PDE6BP35913 854 aa6□□□□□ -1.45
VPS13D-214ENST00000620676 LTV1Q96GA3 475 aaPredicted RBP6□□□□□ -1.45
VPS13D-214ENST00000620676 SLC26A8Q96RN1 970 aa6□□□□□ -1.45
VPS13D-214ENST00000620676 ATP2B1P20020 1258 aa6□□□□□ -1.45
VPS13D-214ENST00000620676 FERMT3Q86UX7 667 aa6□□□□□ -1.45
VPS13D-214ENST00000620676 ZBTB12Q9Y330 459 aaPredicted RBP6□□□□□ -1.45
VPS13D-214ENST00000620676 CASQ1P31415 396 aa6□□□□□ -1.45
VPS13D-214ENST00000620676 AKAP17AQ02040 695 aaKnown RBP6□□□□□ -1.45
VPS13D-214ENST00000620676 SF3A3Q12874 501 aaKnown RBP eCLIP6□□□□□ -1.45
VPS13D-214ENST00000620676 RNF216Q9NWF9 866 aaPredicted RBP6□□□□□ -1.45
VPS13D-214ENST00000620676 CNPY4Q8N129 248 aa6□□□□□ -1.45
VPS13D-214ENST00000620676 SCLT1Q96NL6 688 aa6□□□□□ -1.45
VPS13D-214ENST00000620676 ERBB4Q15303 1308 aa6□□□□□ -1.45
VPS13D-214ENST00000620676 MBD3O95983 291 aa6□□□□□ -1.45
VPS13D-214ENST00000620676 DYDC1Q8WWB3 177 aa6□□□□□ -1.45
VPS13D-214ENST00000620676 RAI14Q9P0K7 980 aa5.99□□□□□ -1.45
VPS13D-214ENST00000620676 RUSC2Q8N2Y8 1516 aa5.99□□□□□ -1.45
VPS13D-214ENST00000620676 NEBLO76041 1014 aa5.99□□□□□ -1.45
VPS13D-214ENST00000620676 PLEKHA4Q9H4M7 779 aa5.99□□□□□ -1.45
VPS13D-214ENST00000620676 ODF2Q5BJF6 829 aa5.99□□□□□ -1.45
VPS13D-214ENST00000620676 INTS3Q68E01 1043 aaKnown RBP5.99□□□□□ -1.45
VPS13D-214ENST00000620676 GOLIM4O00461 696 aa5.99□□□□□ -1.45
VPS13D-214ENST00000620676 PIBF1Q8WXW3 757 aa5.99□□□□□ -1.45
VPS13D-214ENST00000620676 NAT10Q9H0A0 1025 aaKnown RBP5.99□□□□□ -1.45
VPS13D-214ENST00000620676 TSHZ3Q63HK5 1081 aa5.99□□□□□ -1.45
VPS13D-214ENST00000620676 LRRCC1Q9C099 1032 aa5.99□□□□□ -1.45
VPS13D-214ENST00000620676 RASSF4Q9H2L5 321 aa5.99□□□□□ -1.45
VPS13D-214ENST00000620676 SSBP05455 408 aaKnown RBP eCLIP5.99□□□□□ -1.45
VPS13D-214ENST00000620676 NAA25Q14CX7 972 aa5.99□□□□□ -1.45
VPS13D-214ENST00000620676 RIPK4P57078 832 aa5.99□□□□□ -1.45
VPS13D-214ENST00000620676 FAM160A1Q05DH4 1040 aa5.99□□□□□ -1.45
VPS13D-214ENST00000620676 PIK3R5Q8WYR1 880 aa5.99□□□□□ -1.45
VPS13D-214ENST00000620676 HCLS1P14317 486 aaPredicted RBP5.99□□□□□ -1.45
VPS13D-214ENST00000620676 E2F4Q16254 413 aa5.98□□□□□ -1.45
VPS13D-214ENST00000620676 NEK11Q8NG66 645 aa5.98□□□□□ -1.45
VPS13D-214ENST00000620676 KIF18AQ8NI77 898 aa5.98□□□□□ -1.45
VPS13D-214ENST00000620676 DNA2P51530 1060 aa5.98□□□□□ -1.45
VPS13D-214ENST00000620676 BIN1O00499 593 aa5.98□□□□□ -1.45
VPS13D-214ENST00000620676 ARID4AP29374 1257 aaPredicted RBP5.98□□□□□ -1.45
VPS13D-214ENST00000620676 CNPY2Q9Y2B0 182 aa5.98□□□□□ -1.45
VPS13D-214ENST00000620676 SERPINC1P01008 464 aa5.98□□□□□ -1.45
VPS13D-214ENST00000620676 GBP2P32456 591 aaPredicted RBP5.98□□□□□ -1.45
VPS13D-214ENST00000620676 NBPF8Q3BBV2 869 aa5.98□□□□□ -1.45
VPS13D-214ENST00000620676 TXLNBQ8N3L3 684 aa5.98□□□□□ -1.45
VPS13D-214ENST00000620676 MPHOSPH10O00566 681 aaKnown RBP5.98□□□□□ -1.45
VPS13D-214ENST00000620676 CCDC73Q6ZRK6 1079 aa5.98□□□□□ -1.45
VPS13D-214ENST00000620676 ACBD3Q9H3P7 528 aa5.98□□□□□ -1.45
VPS13D-214ENST00000620676 NACADO15069 1562 aa5.98□□□□□ -1.45
VPS13D-214ENST00000620676 TPM1P09493 284 aa5.98□□□□□ -1.45
VPS13D-214ENST00000620676 UPF3BQ9BZI7 483 aaKnown RBP5.98□□□□□ -1.45
VPS13D-214ENST00000620676 TFIP11Q9UBB9 837 aaKnown RBP5.98□□□□□ -1.45
VPS13D-214ENST00000620676 OLFM4Q6UX06 510 aa5.98□□□□□ -1.45
VPS13D-214ENST00000620676 TAX1BP1Q86VP1 789 aa5.98□□□□□ -1.45
VPS13D-214ENST00000620676 TBC1D32Q96NH3 1257 aa5.98□□□□□ -1.45
VPS13D-214ENST00000620676 NF2P35240 595 aa5.97□□□□□ -1.45
VPS13D-214ENST00000620676 FYB1O15117 783 aa5.97□□□□□ -1.45
VPS13D-214ENST00000620676 ATP2B3Q16720 1220 aa5.97□□□□□ -1.45
VPS13D-214ENST00000620676 LRCH2Q5VUJ6 765 aa5.97□□□□□ -1.45
VPS13D-214ENST00000620676 USP48Q86UV5 1035 aa5.97□□□□□ -1.45
VPS13D-214ENST00000620676 A0A1B0GUL7 405 aa5.97□□□□□ -1.45
VPS13D-214ENST00000620676 ZKSCAN5Q9Y2L8 839 aa5.97□□□□□ -1.45
VPS13D-214ENST00000620676 BCL2L12Q9HB09 334 aa5.97□□□□□ -1.45
VPS13D-214ENST00000620676 CCDC183Q5T5S1 534 aa5.97□□□□□ -1.45
VPS13D-214ENST00000620676 CCDC186Q7Z3E2 898 aa5.97□□□□□ -1.45
VPS13D-214ENST00000620676 CHD1LQ86WJ1 897 aa5.97□□□□□ -1.45
VPS13D-214ENST00000620676 GAS2L3Q86XJ1 694 aa5.97□□□□□ -1.45
VPS13D-214ENST00000620676 MCM5P33992 734 aa5.97□□□□□ -1.45
VPS13D-214ENST00000620676 BMS1Q14692 1282 aaKnown RBP5.97□□□□□ -1.45
VPS13D-214ENST00000620676 ANKRD20A12PQ8NF67 263 aa5.97□□□□□ -1.45
VPS13D-214ENST00000620676 PRPF38AQ8NAV1 312 aaKnown RBP5.97□□□□□ -1.45
VPS13D-214ENST00000620676 HMGB2P26583 209 aaKnown RBP5.97□□□□□ -1.45
VPS13D-214ENST00000620676 SART3Q15020 963 aaKnown RBP5.97□□□□□ -1.45
VPS13D-214ENST00000620676 CWC22Q9HCG8 908 aaKnown RBP5.97□□□□□ -1.45
VPS13D-214ENST00000620676 BCCIPQ9P287 314 aaKnown RBP eCLIP5.97□□□□□ -1.45
VPS13D-214ENST00000620676 KIF4AO95239 1232 aa5.97□□□□□ -1.45
VPS13D-214ENST00000620676 FKBP15Q5T1M5 1219 aa5.97□□□□□ -1.45
VPS13D-214ENST00000620676 DDX11Q96FC9 970 aa5.97□□□□□ -1.45
VPS13D-214ENST00000620676 CPLX3Q8WVH0 158 aa5.97□□□□□ -1.45
VPS13D-214ENST00000620676 KINO60870 393 aaKnown RBP5.96□□□□□ -1.45
VPS13D-214ENST00000620676 NGEFQ8N5V2 710 aa5.96□□□□□ -1.45
VPS13D-214ENST00000620676 MYCBPQ99417 103 aaPredicted RBP5.96□□□□□ -1.45
VPS13D-214ENST00000620676 NOL7Q9UMY1 257 aaKnown RBP5.96□□□□□ -1.45
VPS13D-214ENST00000620676 KIF20AO95235 890 aa5.96□□□□□ -1.45
VPS13D-214ENST00000620676 ELF2Q15723 593 aa5.96□□□□□ -1.45
VPS13D-214ENST00000620676 CFAP44Q96MT7 982 aa5.96□□□□□ -1.45
VPS13D-214ENST00000620676 CAPN2P17655 700 aa5.96□□□□□ -1.45
VPS13D-214ENST00000620676 CCDC91Q7Z6B0 441 aa5.96□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms