RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 MARF1Q9Y4F3 1742 aaKnown RBP27.16■■□□□ 1.94
UPF1-212ENST00000601689 PUS7Q96PZ0 661 aaKnown RBP27.15■■□□□ 1.94
UPF1-212ENST00000601689 TMF1P82094 1093 aa27.13■■□□□ 1.93
UPF1-212ENST00000601689 ABTB2Q8N961 1025 aa27.13■■□□□ 1.93
UPF1-212ENST00000601689 ALS2Q96Q42 1657 aa27.13■■□□□ 1.93
UPF1-212ENST00000601689 CDCA8Q53HL2 280 aa27.12■■□□□ 1.93
UPF1-212ENST00000601689 POTEAQ6S8J7 498 aa27.12■■□□□ 1.93
UPF1-212ENST00000601689 TMC1Q8TDI8 760 aa27.12■■□□□ 1.93
UPF1-212ENST00000601689 USP21Q9UK80 565 aa27.12■■□□□ 1.93
UPF1-212ENST00000601689 CABLES1Q8TDN4 633 aa27.11■■□□□ 1.93
UPF1-212ENST00000601689 RXRBP28702 533 aa27.09■■□□□ 1.93
UPF1-212ENST00000601689 NLRP13Q86W25 1043 aa27.09■■□□□ 1.93
UPF1-212ENST00000601689 FNBP4Q8N3X1 1017 aaPredicted RBP27.09■■□□□ 1.93
UPF1-212ENST00000601689 HDGFL2Q7Z4V5 671 aaPredicted RBP27.08■■□□□ 1.93
UPF1-212ENST00000601689 TESK2Q96S53 571 aa27.08■■□□□ 1.93
UPF1-212ENST00000601689 QTRT2Q9H974 415 aaKnown RBP27.08■■□□□ 1.93
UPF1-212ENST00000601689 TRPC5Q9UL62 973 aaPredicted RBP27.08■■□□□ 1.93
UPF1-212ENST00000601689 USP6P35125 1406 aa27.07■■□□□ 1.92
UPF1-212ENST00000601689 TERF2IPQ9NYB0 399 aa27.06■■□□□ 1.92
UPF1-212ENST00000601689 NINLQ9Y2I6 1382 aa27.05■■□□□ 1.92
UPF1-212ENST00000601689 SOCS7O14512 581 aa27.04■■□□□ 1.92
UPF1-212ENST00000601689 KTN1Q86UP2 1357 aaKnown RBP27.04■■□□□ 1.92
UPF1-212ENST00000601689 RBM6P78332 1123 aaKnown RBP27.03■■□□□ 1.92
UPF1-212ENST00000601689 EIF4G2P78344 907 aaKnown RBP eCLIP27.03■■□□□ 1.92
UPF1-212ENST00000601689 NUTM2GQ5VZR2 741 aa27.03■■□□□ 1.92
UPF1-212ENST00000601689 ABCA3Q99758 1704 aa27.03■■□□□ 1.92
UPF1-212ENST00000601689 AKAP12Q02952 1782 aa27.02■■□□□ 1.92
UPF1-212ENST00000601689 TTC21AQ8NDW8 1320 aa27.01■■□□□ 1.91
UPF1-212ENST00000601689 NLRP6P59044 892 aa27■■□□□ 1.91
UPF1-212ENST00000601689 UNC5CLQ8IV45 518 aa27■■□□□ 1.91
UPF1-212ENST00000601689 SLC12A5Q9H2X9 1139 aa26.99■■□□□ 1.91
UPF1-212ENST00000601689 PRDM11Q9NQV5 511 aa26.99■■□□□ 1.91
UPF1-212ENST00000601689 CPSF1Q10570 1443 aaKnown RBP26.98■■□□□ 1.91
UPF1-212ENST00000601689 TTC21BQ7Z4L5 1316 aa26.97■■□□□ 1.91
UPF1-212ENST00000601689 NWD2Q9ULI1 1742 aa26.96■■□□□ 1.91
UPF1-212ENST00000601689 FAM83GA6ND36 823 aa26.95■■□□□ 1.9
UPF1-212ENST00000601689 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.95■■□□□ 1.9
UPF1-212ENST00000601689 SLIT2O94813 1529 aa26.95■■□□□ 1.9
UPF1-212ENST00000601689 COL14A1Q05707 1796 aaKnown RBP26.94■■□□□ 1.9
UPF1-212ENST00000601689 PHRF1Q9P1Y6 1649 aaKnown RBP26.94■■□□□ 1.9
UPF1-212ENST00000601689 CCDC9Q9Y3X0 531 aaKnown RBP26.94■■□□□ 1.9
UPF1-212ENST00000601689 BCL9LQ86UU0 1499 aa26.93■■□□□ 1.9
UPF1-212ENST00000601689 MON2Q7Z3U7 1717 aa26.93■■□□□ 1.9
UPF1-212ENST00000601689 CRYBG1Q9Y4K1 1723 aa26.93■■□□□ 1.9
UPF1-212ENST00000601689 ZC3H6P61129 1189 aaKnown RBP26.93■■□□□ 1.9
UPF1-212ENST00000601689 KCNH5Q8NCM2 988 aa26.93■■□□□ 1.9
UPF1-212ENST00000601689 CDK12Q9NYV4 1490 aaPredicted RBP26.93■■□□□ 1.9
UPF1-212ENST00000601689 PLCH1Q4KWH8 1693 aa26.92■■□□□ 1.9
UPF1-212ENST00000601689 ATRNO75882 1429 aa26.92■■□□□ 1.9
UPF1-212ENST00000601689 SSH2Q76I76 1423 aa26.92■■□□□ 1.9
UPF1-212ENST00000601689 GCP02774 474 aa26.92■■□□□ 1.9
UPF1-212ENST00000601689 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.92■■□□□ 1.9
UPF1-212ENST00000601689 BTG4Q9NY30 223 aa26.92■■□□□ 1.9
UPF1-212ENST00000601689 USP19O94966 1318 aa26.91■■□□□ 1.9
UPF1-212ENST00000601689 GJD4Q96KN9 370 aaPredicted RBP26.91■■□□□ 1.9
UPF1-212ENST00000601689 KIAA0232Q92628 1395 aa26.9■■□□□ 1.9
UPF1-212ENST00000601689 EDC4Q6P2E9 1401 aaKnown RBP26.9■■□□□ 1.9
UPF1-212ENST00000601689 HSPA5P11021 654 aaKnown RBP26.89■■□□□ 1.9
UPF1-212ENST00000601689 A0A1W2PP64 1363 aa26.88■■□□□ 1.89
UPF1-212ENST00000601689 PIK3C2AO00443 1686 aa26.87■■□□□ 1.89
UPF1-212ENST00000601689 EVA1CP58658 441 aa26.87■■□□□ 1.89
UPF1-212ENST00000601689 VPS72Q15906 364 aa26.87■■□□□ 1.89
UPF1-212ENST00000601689 POLR3GLQ9BT43 218 aa26.87■■□□□ 1.89
UPF1-212ENST00000601689 ANKRD36BQ8N2N9 1353 aa26.86■■□□□ 1.89
UPF1-212ENST00000601689 NRKQ7Z2Y5 1582 aa26.86■■□□□ 1.89
UPF1-212ENST00000601689 CD163L1Q9NR16 1453 aa26.86■■□□□ 1.89
UPF1-212ENST00000601689 CPDO75976 1380 aa26.85■■□□□ 1.89
UPF1-212ENST00000601689 ZBTB7CA1YPR0 619 aa26.85■■□□□ 1.89
UPF1-212ENST00000601689 CHRNA2Q15822 529 aa26.85■■□□□ 1.89
UPF1-212ENST00000601689 SLIT3O75094 1523 aa26.81■■□□□ 1.88
UPF1-212ENST00000601689 STRN4Q9NRL3 753 aa26.81■■□□□ 1.88
UPF1-212ENST00000601689 SOX12O15370 315 aa26.8■■□□□ 1.88
UPF1-212ENST00000601689 NME9Q86XW9 330 aa26.8■■□□□ 1.88
UPF1-212ENST00000601689 USP31Q70CQ4 1352 aa26.8■■□□□ 1.88
UPF1-212ENST00000601689 A0A0G2JS52 829 aa26.78■■□□□ 1.88
UPF1-212ENST00000601689 MYT1Q01538 1121 aa26.78■■□□□ 1.88
UPF1-212ENST00000601689 COG3Q96JB2 828 aa26.78■■□□□ 1.88
UPF1-212ENST00000601689 RGS12O14924 1447 aa26.78■■□□□ 1.88
UPF1-212ENST00000601689 NRAPQ86VF7 1730 aa26.78■■□□□ 1.88
UPF1-212ENST00000601689 AATKQ6ZMQ8 1374 aa26.74■■□□□ 1.87
UPF1-212ENST00000601689 USP54Q70EL1 1684 aa26.73■■□□□ 1.87
UPF1-212ENST00000601689 ARHGEF25Q86VW2 580 aa26.73■■□□□ 1.87
UPF1-212ENST00000601689 GLI3P10071 1580 aa26.72■■□□□ 1.87
UPF1-212ENST00000601689 SPATA31A5Q5VU36 1347 aa26.72■■□□□ 1.87
UPF1-212ENST00000601689 SPATA31A7Q8IWB4 1347 aa26.72■■□□□ 1.87
UPF1-212ENST00000601689 ZRANB1Q9UGI0 708 aa26.72■■□□□ 1.87
UPF1-212ENST00000601689 SEPT12Q8IYM1 358 aa26.7■■□□□ 1.86
UPF1-212ENST00000601689 CAMTA1Q9Y6Y1 1673 aa26.7■■□□□ 1.86
UPF1-212ENST00000601689 ONECUT3O60422 494 aaPredicted RBP26.69■■□□□ 1.86
UPF1-212ENST00000601689 FAM98CQ17RN3 349 aaKnown RBP26.69■■□□□ 1.86
UPF1-212ENST00000601689 MYOM1P52179 1685 aa26.69■■□□□ 1.86
UPF1-212ENST00000601689 LMO7Q8WWI1 1683 aa26.69■■□□□ 1.86
UPF1-212ENST00000601689 SPATA31A1Q5TZJ5 1347 aa26.68■■□□□ 1.86
UPF1-212ENST00000601689 CSB-PGBD3P0DP91 1061 aa26.68■■□□□ 1.86
UPF1-212ENST00000601689 USP35Q9P2H5 1018 aa26.68■■□□□ 1.86
UPF1-212ENST00000601689 OVOS2A0A0J9YW53 1432 aa26.67■■□□□ 1.86
UPF1-212ENST00000601689 OVOS2Q6IE36 1432 aa26.67■■□□□ 1.86
UPF1-212ENST00000601689 THRAP3Q9Y2W1 955 aaKnown RBP26.67■■□□□ 1.86
UPF1-212ENST00000601689 LARP1Q6PKG0 1096 aaKnown RBP26.66■■□□□ 1.86
UPF1-212ENST00000601689 TOM1L2Q6ZVM7 507 aa26.66■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms