RNA–Protein interactions for RNA: ENST00000592911.5

SMAD4-215, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-215ENST00000592911 TRPM3Q9HCF6 1732 aaPredicted RBP13.05□□□□□ -0.32
SMAD4-215ENST00000592911 THSD7AQ9UPZ6 1657 aa13.04□□□□□ -0.32
SMAD4-215ENST00000592911 TNS1Q9HBL0 1735 aaKnown RBP13.04□□□□□ -0.32
SMAD4-215ENST00000592911 DHX57Q6P158 1386 aaKnown RBP13.04□□□□□ -0.32
SMAD4-215ENST00000592911 PLEKHH1Q9ULM0 1364 aa13.03□□□□□ -0.32
SMAD4-215ENST00000592911 C14orf93Q9H972 538 aaKnown RBP13.02□□□□□ -0.33
SMAD4-215ENST00000592911 STK26Q9P289 416 aa13.02□□□□□ -0.33
SMAD4-215ENST00000592911 CCDC9Q9Y3X0 531 aaKnown RBP13.02□□□□□ -0.33
SMAD4-215ENST00000592911 FAM83GA6ND36 823 aa13.01□□□□□ -0.33
SMAD4-215ENST00000592911 CRYBG1Q9Y4K1 1723 aa13.01□□□□□ -0.33
SMAD4-215ENST00000592911 GPRASP1Q5JY77 1395 aa13□□□□□ -0.33
SMAD4-215ENST00000592911 SPATA31A5Q5VU36 1347 aa13□□□□□ -0.33
SMAD4-215ENST00000592911 SPATA31A7Q8IWB4 1347 aa13□□□□□ -0.33
SMAD4-215ENST00000592911 NUTM2FA1L443 756 aa12.99□□□□□ -0.33
SMAD4-215ENST00000592911 C11orf95C9JLR9 678 aaPredicted RBP12.99□□□□□ -0.33
SMAD4-215ENST00000592911 ITSN1Q15811 1721 aa12.99□□□□□ -0.33
SMAD4-215ENST00000592911 DSG3P32926 999 aa12.98□□□□□ -0.33
SMAD4-215ENST00000592911 TMEM132EQ6IEE7 984 aa12.98□□□□□ -0.33
SMAD4-215ENST00000592911 TULP4Q9NRJ4 1543 aa12.98□□□□□ -0.33
SMAD4-215ENST00000592911 RREB1Q92766 1687 aa12.97□□□□□ -0.33
SMAD4-215ENST00000592911 FAM98CQ17RN3 349 aaKnown RBP12.97□□□□□ -0.33
SMAD4-215ENST00000592911 FAM196AQ6ZSG2 479 aa12.97□□□□□ -0.33
SMAD4-215ENST00000592911 CABLES1Q8TDN4 633 aa12.97□□□□□ -0.33
SMAD4-215ENST00000592911 STAC3Q96MF2 364 aa12.97□□□□□ -0.33
SMAD4-215ENST00000592911 BTG4Q9NY30 223 aa12.97□□□□□ -0.33
SMAD4-215ENST00000592911 A0A0G2JS52 829 aa12.96□□□□□ -0.33
SMAD4-215ENST00000592911 PSDA5PKW4 1024 aaPredicted RBP12.96□□□□□ -0.33
SMAD4-215ENST00000592911 ABCB7O75027 752 aa12.96□□□□□ -0.33
SMAD4-215ENST00000592911 MYT1Q01538 1121 aa12.96□□□□□ -0.33
SMAD4-215ENST00000592911 RGL3Q3MIN7 710 aa12.96□□□□□ -0.33
SMAD4-215ENST00000592911 ATP7BP35670 1465 aa12.96□□□□□ -0.34
SMAD4-215ENST00000592911 RGPD3A6NKT7 1758 aaPredicted RBP12.95□□□□□ -0.34
SMAD4-215ENST00000592911 RGPD4Q7Z3J3 1758 aa12.95□□□□□ -0.34
SMAD4-215ENST00000592911 EN1Q05925 392 aaPredicted RBP12.95□□□□□ -0.34
SMAD4-215ENST00000592911 POLA2Q14181 598 aa12.95□□□□□ -0.34
SMAD4-215ENST00000592911 LMOD2Q6P5Q4 547 aa12.94□□□□□ -0.34
SMAD4-215ENST00000592911 PRAM1Q96QH2 718 aa12.94□□□□□ -0.34
SMAD4-215ENST00000592911 CAMKK2Q96RR4 588 aa12.94□□□□□ -0.34
SMAD4-215ENST00000592911 MPHOSPH9Q99550 1183 aa12.94□□□□□ -0.34
SMAD4-215ENST00000592911 ADGRB1O14514 1584 aa12.94□□□□□ -0.34
SMAD4-215ENST00000592911 R3HDM1Q15032 1099 aaKnown RBP12.93□□□□□ -0.34
SMAD4-215ENST00000592911 BARGINQ6ZT62 677 aa12.93□□□□□ -0.34
SMAD4-215ENST00000592911 NUP188Q5SRE5 1749 aa12.93□□□□□ -0.34
SMAD4-215ENST00000592911 NINLQ9Y2I6 1382 aa12.93□□□□□ -0.34
SMAD4-215ENST00000592911 SPATA31A1Q5TZJ5 1347 aa12.92□□□□□ -0.34
SMAD4-215ENST00000592911 POGKQ9P215 609 aa12.92□□□□□ -0.34
SMAD4-215ENST00000592911 PHRF1Q9P1Y6 1649 aaKnown RBP12.91□□□□□ -0.34
SMAD4-215ENST00000592911 NBPF8Q3BBV2 869 aa12.91□□□□□ -0.34
SMAD4-215ENST00000592911 NBPF14Q5TI25 921 aa12.91□□□□□ -0.34
SMAD4-215ENST00000592911 PRDM11Q9NQV5 511 aa12.91□□□□□ -0.34
SMAD4-215ENST00000592911 CFAP70Q5T0N1 1121 aa12.9□□□□□ -0.34
SMAD4-215ENST00000592911 WASLO00401 505 aaPredicted RBP12.89□□□□□ -0.35
SMAD4-215ENST00000592911 EZH2Q15910 746 aaKnown RBP12.89□□□□□ -0.35
SMAD4-215ENST00000592911 PMFBP1Q8TBY8 1022 aa12.89□□□□□ -0.35
SMAD4-215ENST00000592911 THRAP3Q9Y2W1 955 aaKnown RBP12.89□□□□□ -0.35
SMAD4-215ENST00000592911 PARP4Q9UKK3 1724 aaKnown RBP12.88□□□□□ -0.35
SMAD4-215ENST00000592911 CPDO75976 1380 aa12.88□□□□□ -0.35
SMAD4-215ENST00000592911 BRD4O60885 1362 aaPredicted RBP12.87□□□□□ -0.35
SMAD4-215ENST00000592911 YY1P25490 414 aa12.87□□□□□ -0.35
SMAD4-215ENST00000592911 NGDNQ8NEJ9 315 aaKnown RBP12.87□□□□□ -0.35
SMAD4-215ENST00000592911 SSH2Q76I76 1423 aa12.87□□□□□ -0.35
SMAD4-215ENST00000592911 POLR3AO14802 1390 aaPredicted RBP12.86□□□□□ -0.35
SMAD4-215ENST00000592911 KIAA0232Q92628 1395 aa12.86□□□□□ -0.35
SMAD4-215ENST00000592911 ARHGEF28Q8N1W1 1705 aaKnown RBP12.86□□□□□ -0.35
SMAD4-215ENST00000592911 TRIM37O94972 964 aa12.86□□□□□ -0.35
SMAD4-215ENST00000592911 APBA3O96018 575 aa12.86□□□□□ -0.35
SMAD4-215ENST00000592911 SPON1Q9HCB6 807 aa12.86□□□□□ -0.35
SMAD4-215ENST00000592911 TOPAZ1Q8N9V7 1692 aa12.86□□□□□ -0.35
SMAD4-215ENST00000592911 LMO7Q8WWI1 1683 aa12.86□□□□□ -0.35
SMAD4-215ENST00000592911 PRR36Q9H6K5 1346 aa12.86□□□□□ -0.35
SMAD4-215ENST00000592911 PDE3BQ13370 1112 aa12.85□□□□□ -0.35
SMAD4-215ENST00000592911 SBF2Q86WG5 1849 aa12.84□□□□□ -0.35
SMAD4-215ENST00000592911 SAFB2Q14151 953 aaKnown RBP eCLIP12.84□□□□□ -0.35
SMAD4-215ENST00000592911 NRKQ7Z2Y5 1582 aa12.84□□□□□ -0.35
SMAD4-215ENST00000592911 CHD4Q14839 1912 aa12.84□□□□□ -0.35
SMAD4-215ENST00000592911 BCL9O00512 1426 aa12.83□□□□□ -0.36
SMAD4-215ENST00000592911 PLSCR1O15162 318 aa12.83□□□□□ -0.36
SMAD4-215ENST00000592911 KCNQ2O43526 872 aa12.83□□□□□ -0.36
SMAD4-215ENST00000592911 TCP11L2Q8N4U5 519 aa12.83□□□□□ -0.36
SMAD4-215ENST00000592911 KIAA1210Q9ULL0 1709 aa12.82□□□□□ -0.36
SMAD4-215ENST00000592911 PAK3O75914 559 aaPredicted RBP12.82□□□□□ -0.36
SMAD4-215ENST00000592911 PPARGC1BQ86YN6 1023 aaKnown RBP12.82□□□□□ -0.36
SMAD4-215ENST00000592911 USP19O94966 1318 aa12.82□□□□□ -0.36
SMAD4-215ENST00000592911 PEAK1Q9H792 1746 aa12.82□□□□□ -0.36
SMAD4-215ENST00000592911 OVOS2A0A0G2JMS6 1433 aa12.81□□□□□ -0.36
SMAD4-215ENST00000592911 OVOS2A0A0J9YW53 1432 aa12.81□□□□□ -0.36
SMAD4-215ENST00000592911 OVOS2Q6IE36 1432 aa12.81□□□□□ -0.36
SMAD4-215ENST00000592911 EVA1CP58658 441 aa12.81□□□□□ -0.36
SMAD4-215ENST00000592911 FAM182BQ5T319 152 aa12.81□□□□□ -0.36
SMAD4-215ENST00000592911 PPP1R1BQ9UD71 204 aaPredicted RBP12.81□□□□□ -0.36
SMAD4-215ENST00000592911 TRAK1Q9UPV9 953 aa12.81□□□□□ -0.36
SMAD4-215ENST00000592911 MINK1Q8N4C8 1332 aaPredicted RBP12.81□□□□□ -0.36
SMAD4-215ENST00000592911 CASZ1Q86V15 1759 aa12.81□□□□□ -0.36
SMAD4-215ENST00000592911 CAMTA1Q9Y6Y1 1673 aa12.8□□□□□ -0.36
SMAD4-215ENST00000592911 PLEKHG3A1L390 1219 aa12.8□□□□□ -0.36
SMAD4-215ENST00000592911 NUDT16Q96DE0 195 aaKnown RBP12.8□□□□□ -0.36
SMAD4-215ENST00000592911 CCDC61Q9Y6R9 512 aa12.8□□□□□ -0.36
SMAD4-215ENST00000592911 PLEKHG5O94827 1062 aa12.79□□□□□ -0.36
SMAD4-215ENST00000592911 HIRIP3Q9BW71 556 aaPredicted RBP12.79□□□□□ -0.36
SMAD4-215ENST00000592911 STRN4Q9NRL3 753 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms