RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 ZNF772Q68DY9 489 aaPredicted RBP28.48■■■□□ 2.15
SS18-218ENST00000581021 NGLY1Q96IV0 654 aa28.47■■■□□ 2.15
SS18-218ENST00000581021 USP6P35125 1406 aa28.45■■■□□ 2.15
SS18-218ENST00000581021 FNBP4Q8N3X1 1017 aaPredicted RBP28.45■■■□□ 2.14
SS18-218ENST00000581021 ATAD2Q6PL18 1390 aa28.45■■■□□ 2.14
SS18-218ENST00000581021 SSH2Q76I76 1423 aa28.43■■■□□ 2.14
SS18-218ENST00000581021 BCL9LQ86UU0 1499 aa28.42■■■□□ 2.14
SS18-218ENST00000581021 AKAP12Q02952 1782 aa28.42■■■□□ 2.14
SS18-218ENST00000581021 CD163L1Q9NR16 1453 aa28.41■■■□□ 2.14
SS18-218ENST00000581021 NUTM2GQ5VZR2 741 aa28.41■■■□□ 2.14
SS18-218ENST00000581021 SLIT2O94813 1529 aa28.4■■■□□ 2.14
SS18-218ENST00000581021 SOCS7O14512 581 aa28.4■■■□□ 2.14
SS18-218ENST00000581021 CPSF1Q10570 1443 aaKnown RBP28.4■■■□□ 2.14
SS18-218ENST00000581021 PHRF1Q9P1Y6 1649 aaKnown RBP28.4■■■□□ 2.14
SS18-218ENST00000581021 NRKQ7Z2Y5 1582 aa28.39■■■□□ 2.14
SS18-218ENST00000581021 HAP1P54257 671 aaPredicted RBP28.38■■■□□ 2.13
SS18-218ENST00000581021 USP21Q9UK80 565 aa28.38■■■□□ 2.13
SS18-218ENST00000581021 PLCH1Q4KWH8 1693 aa28.37■■■□□ 2.13
SS18-218ENST00000581021 ATRNO75882 1429 aa28.36■■■□□ 2.13
SS18-218ENST00000581021 PIK3C2AO00443 1686 aa28.36■■■□□ 2.13
SS18-218ENST00000581021 QTRT2Q9H974 415 aaKnown RBP28.35■■■□□ 2.13
SS18-218ENST00000581021 BRD4O60885 1362 aaPredicted RBP28.35■■■□□ 2.13
SS18-218ENST00000581021 MON2Q7Z3U7 1717 aa28.35■■■□□ 2.13
SS18-218ENST00000581021 ABTB2Q8N961 1025 aa28.34■■■□□ 2.13
SS18-218ENST00000581021 USP19O94966 1318 aa28.34■■■□□ 2.13
SS18-218ENST00000581021 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.33■■■□□ 2.13
SS18-218ENST00000581021 FAM83GA6ND36 823 aa28.33■■■□□ 2.13
SS18-218ENST00000581021 SLC12A5Q9H2X9 1139 aa28.33■■■□□ 2.13
SS18-218ENST00000581021 RXRBP28702 533 aa28.32■■■□□ 2.12
SS18-218ENST00000581021 PUS7Q96PZ0 661 aaKnown RBP28.32■■■□□ 2.12
SS18-218ENST00000581021 KTN1Q86UP2 1357 aaKnown RBP28.3■■■□□ 2.12
SS18-218ENST00000581021 TTC21BQ7Z4L5 1316 aa28.3■■■□□ 2.12
SS18-218ENST00000581021 TMC1Q8TDI8 760 aa28.3■■■□□ 2.12
SS18-218ENST00000581021 NWD2Q9ULI1 1742 aa28.29■■■□□ 2.12
SS18-218ENST00000581021 RGS12O14924 1447 aa28.29■■■□□ 2.12
SS18-218ENST00000581021 NRAPQ86VF7 1730 aa28.29■■■□□ 2.12
SS18-218ENST00000581021 CDK12Q9NYV4 1490 aaPredicted RBP28.28■■■□□ 2.12
SS18-218ENST00000581021 A0A1W2PP64 1363 aa28.28■■■□□ 2.12
SS18-218ENST00000581021 KIAA0232Q92628 1395 aa28.28■■■□□ 2.12
SS18-218ENST00000581021 UNC5CLQ8IV45 518 aa28.28■■■□□ 2.12
SS18-218ENST00000581021 ZNF692Q9BU19 519 aaPredicted RBP28.28■■■□□ 2.12
SS18-218ENST00000581021 TRPC5Q9UL62 973 aaPredicted RBP28.28■■■□□ 2.12
SS18-218ENST00000581021 COL14A1Q05707 1796 aaKnown RBP28.28■■■□□ 2.12
SS18-218ENST00000581021 RBM6P78332 1123 aaKnown RBP28.27■■■□□ 2.12
SS18-218ENST00000581021 SLIT3O75094 1523 aa28.27■■■□□ 2.12
SS18-218ENST00000581021 TMF1P82094 1093 aa28.25■■■□□ 2.11
SS18-218ENST00000581021 GLI3P10071 1580 aa28.24■■■□□ 2.11
SS18-218ENST00000581021 ZC3H6P61129 1189 aaKnown RBP28.23■■■□□ 2.11
SS18-218ENST00000581021 NLRP13Q86W25 1043 aa28.23■■■□□ 2.11
SS18-218ENST00000581021 PRDM11Q9NQV5 511 aa28.23■■■□□ 2.11
SS18-218ENST00000581021 SLC24A1O60721 1099 aa28.22■■■□□ 2.11
SS18-218ENST00000581021 NLRP6P59044 892 aa28.22■■■□□ 2.11
SS18-218ENST00000581021 CHRNA2Q15822 529 aa28.22■■■□□ 2.11
SS18-218ENST00000581021 NINLQ9Y2I6 1382 aa28.22■■■□□ 2.11
SS18-218ENST00000581021 TTC21AQ8NDW8 1320 aa28.21■■■□□ 2.11
SS18-218ENST00000581021 GCP02774 474 aa28.21■■■□□ 2.11
SS18-218ENST00000581021 HSPA5P11021 654 aaKnown RBP28.21■■■□□ 2.11
SS18-218ENST00000581021 BTG4Q9NY30 223 aa28.21■■■□□ 2.11
SS18-218ENST00000581021 ZRANB1Q9UGI0 708 aa28.21■■■□□ 2.11
SS18-218ENST00000581021 MYOM1P52179 1685 aa28.2■■■□□ 2.11
SS18-218ENST00000581021 CPDO75976 1380 aa28.2■■■□□ 2.1
SS18-218ENST00000581021 EDC4Q6P2E9 1401 aaKnown RBP28.19■■■□□ 2.1
SS18-218ENST00000581021 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.19■■■□□ 2.1
SS18-218ENST00000581021 GJD4Q96KN9 370 aaPredicted RBP28.19■■■□□ 2.1
SS18-218ENST00000581021 LMO7Q8WWI1 1683 aa28.19■■■□□ 2.1
SS18-218ENST00000581021 VPS72Q15906 364 aa28.18■■■□□ 2.1
SS18-218ENST00000581021 HDGFL2Q7Z4V5 671 aaPredicted RBP28.18■■■□□ 2.1
SS18-218ENST00000581021 NME9Q86XW9 330 aa28.18■■■□□ 2.1
SS18-218ENST00000581021 TERF2IPQ9NYB0 399 aa28.18■■■□□ 2.1
SS18-218ENST00000581021 USP54Q70EL1 1684 aa28.18■■■□□ 2.1
SS18-218ENST00000581021 EIF4G2P78344 907 aaKnown RBP eCLIP28.17■■■□□ 2.1
SS18-218ENST00000581021 NFAT5O94916 1531 aa28.16■■■□□ 2.1
SS18-218ENST00000581021 CAMTA1Q9Y6Y1 1673 aa28.16■■■□□ 2.1
SS18-218ENST00000581021 USP31Q70CQ4 1352 aa28.15■■■□□ 2.1
SS18-218ENST00000581021 ANKRD36BQ8N2N9 1353 aa28.15■■■□□ 2.1
SS18-218ENST00000581021 CDCA8Q53HL2 280 aa28.11■■■□□ 2.09
SS18-218ENST00000581021 OVOS2A0A0J9YW53 1432 aa28.1■■■□□ 2.09
SS18-218ENST00000581021 OVOS2Q6IE36 1432 aa28.1■■■□□ 2.09
SS18-218ENST00000581021 COL18A1P39060 1754 aa28.09■■■□□ 2.09
SS18-218ENST00000581021 SOX12O15370 315 aa28.09■■■□□ 2.09
SS18-218ENST00000581021 CCDC9Q9Y3X0 531 aaKnown RBP28.07■■■□□ 2.08
SS18-218ENST00000581021 SPATA31A5Q5VU36 1347 aa28.07■■■□□ 2.08
SS18-218ENST00000581021 SPATA31A7Q8IWB4 1347 aa28.07■■■□□ 2.08
SS18-218ENST00000581021 ZBTB7CA1YPR0 619 aa28.06■■■□□ 2.08
SS18-218ENST00000581021 C11orf95C9JLR9 678 aaPredicted RBP28.06■■■□□ 2.08
SS18-218ENST00000581021 AATKQ6ZMQ8 1374 aa28.06■■■□□ 2.08
SS18-218ENST00000581021 COL5A2P05997 1499 aaPredicted RBP28.06■■■□□ 2.08
SS18-218ENST00000581021 ARHGEF25Q86VW2 580 aa28.05■■■□□ 2.08
SS18-218ENST00000581021 STRN4Q9NRL3 753 aa28.05■■■□□ 2.08
SS18-218ENST00000581021 KCNH5Q8NCM2 988 aa28.04■■■□□ 2.08
SS18-218ENST00000581021 CARD14Q9BXL6 1004 aa28.04■■■□□ 2.08
SS18-218ENST00000581021 ONECUT3O60422 494 aaPredicted RBP28.03■■■□□ 2.08
SS18-218ENST00000581021 LARP1Q6PKG0 1096 aaKnown RBP28.02■■■□□ 2.08
SS18-218ENST00000581021 AXIN2Q9Y2T1 843 aa28.02■■■□□ 2.08
SS18-218ENST00000581021 BRWD3Q6RI45 1802 aa28.02■■■□□ 2.08
SS18-218ENST00000581021 EP400Q96L91 3159 aa28.01■■■□□ 2.08
SS18-218ENST00000581021 SPATA31A1Q5TZJ5 1347 aa28.01■■■□□ 2.07
SS18-218ENST00000581021 THSD7AQ9UPZ6 1657 aa28■■■□□ 2.07
SS18-218ENST00000581021 FAM98CQ17RN3 349 aaKnown RBP28■■■□□ 2.07
SS18-218ENST00000581021 SEPT12Q8IYM1 358 aa28■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms