RNA–Protein interactions for RNA: ENST00000570380.5

CTDNEP1-202, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 5

Gene CTDNEP1, Length 506 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-202ENST00000570380 PARD3Q8TEW0 1356 aa15.78■□□□□ 0.12
CTDNEP1-202ENST00000570380 APBA3O96018 575 aa15.78■□□□□ 0.12
CTDNEP1-202ENST00000570380 FAM196AQ6ZSG2 479 aa15.78■□□□□ 0.12
CTDNEP1-202ENST00000570380 CAMTA1Q9Y6Y1 1673 aa15.78■□□□□ 0.12
CTDNEP1-202ENST00000570380 SAFB2Q14151 953 aaKnown RBP eCLIP15.76■□□□□ 0.11
CTDNEP1-202ENST00000570380 SPATA31A1Q5TZJ5 1347 aa15.75■□□□□ 0.11
CTDNEP1-202ENST00000570380 ANKARQ7Z5J8 1434 aa15.75■□□□□ 0.11
CTDNEP1-202ENST00000570380 PRAM1Q96QH2 718 aa15.74■□□□□ 0.11
CTDNEP1-202ENST00000570380 C14orf93Q9H972 538 aaKnown RBP15.74■□□□□ 0.11
CTDNEP1-202ENST00000570380 NBPF8Q3BBV2 869 aa15.73■□□□□ 0.11
CTDNEP1-202ENST00000570380 NBPF14Q5TI25 921 aa15.73■□□□□ 0.11
CTDNEP1-202ENST00000570380 SPON1Q9HCB6 807 aa15.73■□□□□ 0.11
CTDNEP1-202ENST00000570380 PRDM11Q9NQV5 511 aa15.73■□□□□ 0.11
CTDNEP1-202ENST00000570380 PPP1R1BQ9UD71 204 aaPredicted RBP15.73■□□□□ 0.11
CTDNEP1-202ENST00000570380 NINLQ9Y2I6 1382 aa15.73■□□□□ 0.11
CTDNEP1-202ENST00000570380 DCAF8L1A6NGE4 600 aa15.72■□□□□ 0.11
CTDNEP1-202ENST00000570380 KCNQ2O43526 872 aa15.72■□□□□ 0.11
CTDNEP1-202ENST00000570380 GPRASP1Q5JY77 1395 aa15.72■□□□□ 0.11
CTDNEP1-202ENST00000570380 DHX57Q6P158 1386 aaKnown RBP15.72■□□□□ 0.11
CTDNEP1-202ENST00000570380 CFAP70Q5T0N1 1121 aa15.71■□□□□ 0.11
CTDNEP1-202ENST00000570380 ACIN1Q9UKV3 1341 aaKnown RBP15.7■□□□□ 0.1
CTDNEP1-202ENST00000570380 PHRF1Q9P1Y6 1649 aaKnown RBP15.7■□□□□ 0.1
CTDNEP1-202ENST00000570380 UTRNP46939 3433 aa15.69■□□□□ 0.1
CTDNEP1-202ENST00000570380 PRR36Q9H6K5 1346 aa15.69■□□□□ 0.1
CTDNEP1-202ENST00000570380 DLC1Q96QB1 1528 aa15.69■□□□□ 0.1
CTDNEP1-202ENST00000570380 CHRNA2Q15822 529 aa15.69■□□□□ 0.1
CTDNEP1-202ENST00000570380 STRN4Q9NRL3 753 aa15.69■□□□□ 0.1
CTDNEP1-202ENST00000570380 KIAA0232Q92628 1395 aa15.69■□□□□ 0.1
CTDNEP1-202ENST00000570380 PDE3BQ13370 1112 aa15.68■□□□□ 0.1
CTDNEP1-202ENST00000570380 POGKQ9P215 609 aa15.68■□□□□ 0.1
CTDNEP1-202ENST00000570380 USP35Q9P2H5 1018 aa15.68■□□□□ 0.1
CTDNEP1-202ENST00000570380 CASZ1Q86V15 1759 aa15.67■□□□□ 0.1
CTDNEP1-202ENST00000570380 CHD4Q14839 1912 aa15.67■□□□□ 0.1
CTDNEP1-202ENST00000570380 SBF2Q86WG5 1849 aa15.67■□□□□ 0.1
CTDNEP1-202ENST00000570380 PAK3O75914 559 aaPredicted RBP15.67■□□□□ 0.1
CTDNEP1-202ENST00000570380 BARGINQ6ZT62 677 aa15.66■□□□□ 0.1
CTDNEP1-202ENST00000570380 ZNF784Q8NCA9 323 aaPredicted RBP15.66■□□□□ 0.1
CTDNEP1-202ENST00000570380 HIRIP3Q9BW71 556 aaPredicted RBP15.66■□□□□ 0.1
CTDNEP1-202ENST00000570380 TULP4Q9NRJ4 1543 aa15.66■□□□□ 0.1
CTDNEP1-202ENST00000570380 RGPD3A6NKT7 1758 aaPredicted RBP15.65■□□□□ 0.1
CTDNEP1-202ENST00000570380 RGPD4Q7Z3J3 1758 aa15.65■□□□□ 0.1
CTDNEP1-202ENST00000570380 NRKQ7Z2Y5 1582 aa15.65■□□□□ 0.1
CTDNEP1-202ENST00000570380 ZC3H6P61129 1189 aaKnown RBP15.64■□□□□ 0.09
CTDNEP1-202ENST00000570380 ITSN1Q15811 1721 aa15.64■□□□□ 0.09
CTDNEP1-202ENST00000570380 SSH2Q76I76 1423 aa15.64■□□□□ 0.09
CTDNEP1-202ENST00000570380 NGDNQ8NEJ9 315 aaKnown RBP15.64■□□□□ 0.09
CTDNEP1-202ENST00000570380 PARP4Q9UKK3 1724 aaKnown RBP15.64■□□□□ 0.09
CTDNEP1-202ENST00000570380 MYOM1P52179 1685 aa15.63■□□□□ 0.09
CTDNEP1-202ENST00000570380 MINK1Q8N4C8 1332 aaPredicted RBP15.63■□□□□ 0.09
CTDNEP1-202ENST00000570380 EIF3AQ14152 1382 aaKnown RBP15.62■□□□□ 0.09
CTDNEP1-202ENST00000570380 EVA1CP58658 441 aa15.62■□□□□ 0.09
CTDNEP1-202ENST00000570380 MPHOSPH9Q99550 1183 aa15.62■□□□□ 0.09
CTDNEP1-202ENST00000570380 PEAK1Q9H792 1746 aa15.62■□□□□ 0.09
CTDNEP1-202ENST00000570380 ADGRB1O14514 1584 aa15.62■□□□□ 0.09
CTDNEP1-202ENST00000570380 LMO7Q8WWI1 1683 aa15.61■□□□□ 0.09
CTDNEP1-202ENST00000570380 WASLO00401 505 aaPredicted RBP15.61■□□□□ 0.09
CTDNEP1-202ENST00000570380 LARP1Q6PKG0 1096 aaKnown RBP15.61■□□□□ 0.09
CTDNEP1-202ENST00000570380 PDGFDQ9GZP0 370 aaPredicted RBP15.61■□□□□ 0.09
CTDNEP1-202ENST00000570380 SENP3-EIF4A1A0A087X0R7 540 aa15.6■□□□□ 0.09
CTDNEP1-202ENST00000570380 NUTM2GQ5VZR2 741 aa15.6■□□□□ 0.09
CTDNEP1-202ENST00000570380 TCP11L2Q8N4U5 519 aa15.6■□□□□ 0.09
CTDNEP1-202ENST00000570380 ANO8Q9HCE9 1232 aaPredicted RBP15.6■□□□□ 0.09
CTDNEP1-202ENST00000570380 TRAK1Q9UPV9 953 aa15.6■□□□□ 0.09
CTDNEP1-202ENST00000570380 ATP7BP35670 1465 aa15.59■□□□□ 0.09
CTDNEP1-202ENST00000570380 PLSCR1O15162 318 aa15.57■□□□□ 0.08
CTDNEP1-202ENST00000570380 C1QTNF8P60827 252 aa15.57■□□□□ 0.08
CTDNEP1-202ENST00000570380 IFFO2Q5TF58 517 aa15.57■□□□□ 0.08
CTDNEP1-202ENST00000570380 ZBTB7AO95365 584 aa15.56■□□□□ 0.08
CTDNEP1-202ENST00000570380 PTGER2P43116 358 aa15.56■□□□□ 0.08
CTDNEP1-202ENST00000570380 THRAP3Q9Y2W1 955 aaKnown RBP15.56■□□□□ 0.08
CTDNEP1-202ENST00000570380 NUDT16Q96DE0 195 aaKnown RBP15.55■□□□□ 0.08
CTDNEP1-202ENST00000570380 LRRC37A3O60309 1634 aa15.54■□□□□ 0.08
CTDNEP1-202ENST00000570380 OVOS2A0A0G2JMS6 1433 aa15.54■□□□□ 0.08
CTDNEP1-202ENST00000570380 OVOS2A0A0J9YW53 1432 aa15.54■□□□□ 0.08
CTDNEP1-202ENST00000570380 OVOS2Q6IE36 1432 aa15.54■□□□□ 0.08
CTDNEP1-202ENST00000570380 C11orf95C9JLR9 678 aaPredicted RBP15.54■□□□□ 0.08
CTDNEP1-202ENST00000570380 PTF1AQ7RTS3 328 aa15.54■□□□□ 0.08
CTDNEP1-202ENST00000570380 PROM2Q8N271 834 aa15.54■□□□□ 0.08
CTDNEP1-202ENST00000570380 ATF5Q9Y2D1 282 aaPredicted RBP15.54■□□□□ 0.08
CTDNEP1-202ENST00000570380 ARHGEF28Q8N1W1 1705 aaKnown RBP15.54■□□□□ 0.08
CTDNEP1-202ENST00000570380 TOPAZ1Q8N9V7 1692 aa15.54■□□□□ 0.08
CTDNEP1-202ENST00000570380 CPDO75976 1380 aa15.53■□□□□ 0.08
CTDNEP1-202ENST00000570380 SYT17Q9BSW7 474 aa15.53■□□□□ 0.08
CTDNEP1-202ENST00000570380 COL5A2P05997 1499 aaPredicted RBP15.52■□□□□ 0.08
CTDNEP1-202ENST00000570380 WNK3Q9BYP7 1800 aa15.52■□□□□ 0.08
CTDNEP1-202ENST00000570380 AKAP12Q02952 1782 aa15.52■□□□□ 0.08
CTDNEP1-202ENST00000570380 FHDC1Q9C0D6 1143 aaPredicted RBP15.52■□□□□ 0.08
CTDNEP1-202ENST00000570380 POLR3AO14802 1390 aaPredicted RBP15.51■□□□□ 0.07
CTDNEP1-202ENST00000570380 BCL11BQ9C0K0 894 aaPredicted RBP15.51■□□□□ 0.07
CTDNEP1-202ENST00000570380 ACEP12821 1306 aa15.5■□□□□ 0.07
CTDNEP1-202ENST00000570380 ABTB2Q8N961 1025 aa15.5■□□□□ 0.07
CTDNEP1-202ENST00000570380 CRB1P82279 1406 aa15.5■□□□□ 0.07
CTDNEP1-202ENST00000570380 USP19O94966 1318 aa15.49■□□□□ 0.07
CTDNEP1-202ENST00000570380 DDB1Q16531 1140 aa15.48■□□□□ 0.07
CTDNEP1-202ENST00000570380 SGIP1Q9BQI5 828 aa15.48■□□□□ 0.07
CTDNEP1-202ENST00000570380 GCP02774 474 aa15.47■□□□□ 0.07
CTDNEP1-202ENST00000570380 CDK19Q9BWU1 502 aa15.47■□□□□ 0.07
CTDNEP1-202ENST00000570380 SLC15A2Q16348 729 aa15.46■□□□□ 0.07
CTDNEP1-202ENST00000570380 TXNRD1Q16881 649 aa15.46■□□□□ 0.07
CTDNEP1-202ENST00000570380 STK32BQ9NY57 414 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms