RNA–Protein interactions for RNA: ENST00000564845.5

CHD9-213, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 11,504 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-213ENST00000564845 NME9Q86XW9 330 aa4.32□□□□□ -1.72
CHD9-213ENST00000564845 NEXMIFQ5QGS0 1516 aa4.32□□□□□ -1.72
CHD9-213ENST00000564845 PTPRMP28827 1452 aa4.32□□□□□ -1.72
CHD9-213ENST00000564845 TET3O43151 1660 aa4.32□□□□□ -1.72
CHD9-213ENST00000564845 BLMP54132 1417 aaPredicted RBP4.32□□□□□ -1.72
CHD9-213ENST00000564845 CANXP27824 592 aaKnown RBP4.32□□□□□ -1.72
CHD9-213ENST00000564845 MORC1Q86VD1 984 aa4.32□□□□□ -1.72
CHD9-213ENST00000564845 ATP7AQ04656 1500 aa4.32□□□□□ -1.72
CHD9-213ENST00000564845 KTN1Q86UP2 1357 aaKnown RBP4.32□□□□□ -1.72
CHD9-213ENST00000564845 CABLES1Q8TDN4 633 aa4.31□□□□□ -1.72
CHD9-213ENST00000564845 MAP3K4Q9Y6R4 1608 aa4.31□□□□□ -1.72
CHD9-213ENST00000564845 POGZQ7Z3K3 1410 aa4.31□□□□□ -1.72
CHD9-213ENST00000564845 REREQ9P2R6 1566 aa4.31□□□□□ -1.72
CHD9-213ENST00000564845 RANBP2P49792 3224 aaKnown RBP4.31□□□□□ -1.72
CHD9-213ENST00000564845 TULP4Q9NRJ4 1543 aa4.31□□□□□ -1.72
CHD9-213ENST00000564845 KIAA1210Q9ULL0 1709 aa4.31□□□□□ -1.72
CHD9-213ENST00000564845 AEBP1Q8IUX7 1158 aa4.31□□□□□ -1.72
CHD9-213ENST00000564845 CCDC9Q9Y3X0 531 aaKnown RBP4.31□□□□□ -1.72
CHD9-213ENST00000564845 NPC1L1Q9UHC9 1359 aa4.31□□□□□ -1.72
CHD9-213ENST00000564845 MED14O60244 1454 aa4.31□□□□□ -1.72
CHD9-213ENST00000564845 RCAN3Q9UKA8 241 aa4.31□□□□□ -1.72
CHD9-213ENST00000564845 IGHDP01880 384 aa4.31□□□□□ -1.72
CHD9-213ENST00000564845 ERICH6BQ5W0A0 696 aa4.3□□□□□ -1.72
CHD9-213ENST00000564845 JARID2Q92833 1246 aaPredicted RBP4.3□□□□□ -1.72
CHD9-213ENST00000564845 COL3A1P02461 1466 aaPredicted RBP4.3□□□□□ -1.72
CHD9-213ENST00000564845 RLBP1P12271 317 aa4.3□□□□□ -1.72
CHD9-213ENST00000564845 CDK19Q9BWU1 502 aa4.3□□□□□ -1.72
CHD9-213ENST00000564845 ZC3H13Q5T200 1668 aaKnown RBP4.3□□□□□ -1.72
CHD9-213ENST00000564845 SEC24BO95487 1268 aa4.3□□□□□ -1.72
CHD9-213ENST00000564845 DLC1Q96QB1 1528 aa4.3□□□□□ -1.72
CHD9-213ENST00000564845 TSHZ3Q63HK5 1081 aa4.3□□□□□ -1.72
CHD9-213ENST00000564845 WDFY3Q8IZQ1 3526 aa4.29□□□□□ -1.72
CHD9-213ENST00000564845 AAMPQ13685 434 aa4.29□□□□□ -1.72
CHD9-213ENST00000564845 IQSEC2Q5JU85 1478 aa4.29□□□□□ -1.72
CHD9-213ENST00000564845 ANXA1P04083 346 aa4.29□□□□□ -1.72
CHD9-213ENST00000564845 MCM10Q7L590 875 aa4.29□□□□□ -1.72
CHD9-213ENST00000564845 MYBBP1AQ9BQG0 1328 aaKnown RBP4.29□□□□□ -1.72
CHD9-213ENST00000564845 PHACTR3Q96KR7 559 aa4.29□□□□□ -1.72
CHD9-213ENST00000564845 CEP152O94986 1710 aa4.29□□□□□ -1.72
CHD9-213ENST00000564845 TSPYL6Q8N831 410 aa4.29□□□□□ -1.72
CHD9-213ENST00000564845 TMEM131LA2VDJ0 1609 aa4.29□□□□□ -1.72
CHD9-213ENST00000564845 LTKP29376 864 aa4.29□□□□□ -1.72
CHD9-213ENST00000564845 SETBP1Q9Y6X0 1596 aa4.29□□□□□ -1.72
CHD9-213ENST00000564845 CCDC34Q96HJ3 373 aa4.29□□□□□ -1.72
CHD9-213ENST00000564845 ZFYVE9O95405 1425 aa4.29□□□□□ -1.72
CHD9-213ENST00000564845 NUDCQ9Y266 331 aa4.28□□□□□ -1.72
CHD9-213ENST00000564845 NRDCO43847 1150 aa4.28□□□□□ -1.72
CHD9-213ENST00000564845 GLI2P10070 1586 aa4.28□□□□□ -1.72
CHD9-213ENST00000564845 TCP11L2Q8N4U5 519 aa4.28□□□□□ -1.72
CHD9-213ENST00000564845 CDK11BP21127 795 aaKnown RBP4.28□□□□□ -1.72
CHD9-213ENST00000564845 RRP1P56182 461 aaKnown RBP4.28□□□□□ -1.72
CHD9-213ENST00000564845 DIP2BQ9P265 1576 aa4.28□□□□□ -1.72
CHD9-213ENST00000564845 NSD3Q9BZ95 1437 aa4.28□□□□□ -1.72
CHD9-213ENST00000564845 PDIA4P13667 645 aaKnown RBP4.28□□□□□ -1.72
CHD9-213ENST00000564845 E9PSI1 815 aa4.28□□□□□ -1.72
CHD9-213ENST00000564845 SMIM5Q71RC9 77 aa4.28□□□□□ -1.72
CHD9-213ENST00000564845 ADGRB2O60241 1585 aa4.28□□□□□ -1.73
CHD9-213ENST00000564845 ARHGEF40Q8TER5 1519 aa4.28□□□□□ -1.73
CHD9-213ENST00000564845 ZBED9Q6R2W3 1325 aa4.27□□□□□ -1.73
CHD9-213ENST00000564845 LARP6Q9BRS8 491 aaKnown RBP4.27□□□□□ -1.73
CHD9-213ENST00000564845 CALD1Q05682 793 aaKnown RBP4.27□□□□□ -1.73
CHD9-213ENST00000564845 CASC1Q6TDU7 716 aa4.27□□□□□ -1.73
CHD9-213ENST00000564845 LRRC59Q96AG4 307 aaKnown RBP4.27□□□□□ -1.73
CHD9-213ENST00000564845 FOXD4L6Q3SYB3 417 aaPredicted RBP4.27□□□□□ -1.73
CHD9-213ENST00000564845 FOXD4L3Q6VB84 417 aaPredicted RBP4.27□□□□□ -1.73
CHD9-213ENST00000564845 HSP90AB2PQ58FF8 381 aa4.27□□□□□ -1.73
CHD9-213ENST00000564845 PPLO60437 1756 aa4.27□□□□□ -1.73
CHD9-213ENST00000564845 F6X3S4 739 aa4.27□□□□□ -1.73
CHD9-213ENST00000564845 TRIM44Q96DX7 344 aaPredicted RBP4.27□□□□□ -1.73
CHD9-213ENST00000564845 GOLGA6L6A8MZA4 724 aa4.27□□□□□ -1.73
CHD9-213ENST00000564845 MAP4K4O95819 1239 aaPredicted RBP4.27□□□□□ -1.73
CHD9-213ENST00000564845 NOL8Q76FK4 1167 aaKnown RBP4.27□□□□□ -1.73
CHD9-213ENST00000564845 EXOSC9Q06265 439 aaKnown RBP4.26□□□□□ -1.73
CHD9-213ENST00000564845 SLC4A10Q6U841 1118 aa4.26□□□□□ -1.73
CHD9-213ENST00000564845 SPATA31D1Q6ZQQ2 1576 aa4.26□□□□□ -1.73
CHD9-213ENST00000564845 PRAMEF22A3QJZ6 481 aa4.26□□□□□ -1.73
CHD9-213ENST00000564845 CHAMP1Q96JM3 812 aa4.26□□□□□ -1.73
CHD9-213ENST00000564845 PNPLA6Q8IY17 1366 aa4.26□□□□□ -1.73
CHD9-213ENST00000564845 SSH2Q76I76 1423 aa4.26□□□□□ -1.73
CHD9-213ENST00000564845 SMG6Q86US8 1419 aaKnown RBP4.26□□□□□ -1.73
CHD9-213ENST00000564845 ZC3H6P61129 1189 aaKnown RBP4.26□□□□□ -1.73
CHD9-213ENST00000564845 SLKQ9H2G2 1235 aaPredicted RBP4.26□□□□□ -1.73
CHD9-213ENST00000564845 AGLP35573 1532 aa4.26□□□□□ -1.73
CHD9-213ENST00000564845 ZNF330Q9Y3S2 320 aaPredicted RBP4.26□□□□□ -1.73
CHD9-213ENST00000564845 CENPJQ9HC77 1338 aaPredicted RBP4.26□□□□□ -1.73
CHD9-213ENST00000564845 C16orf71Q8IYS4 520 aaPredicted RBP4.26□□□□□ -1.73
CHD9-213ENST00000564845 METP08581 1390 aa4.26□□□□□ -1.73
CHD9-213ENST00000564845 USP32Q8NFA0 1604 aa4.26□□□□□ -1.73
CHD9-213ENST00000564845 ARHGEF28Q8N1W1 1705 aaKnown RBP4.26□□□□□ -1.73
CHD9-213ENST00000564845 MYH16Q9H6N6 1097 aa4.26□□□□□ -1.73
CHD9-213ENST00000564845 USP19O94966 1318 aa4.26□□□□□ -1.73
CHD9-213ENST00000564845 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.26□□□□□ -1.73
CHD9-213ENST00000564845 FYB1O15117 783 aa4.26□□□□□ -1.73
CHD9-213ENST00000564845 DUSP27Q5VZP5 1158 aa4.26□□□□□ -1.73
CHD9-213ENST00000564845 NLRP13Q86W25 1043 aa4.26□□□□□ -1.73
CHD9-213ENST00000564845 PRKAR2BP31323 418 aa4.25□□□□□ -1.73
CHD9-213ENST00000564845 RIPK4P57078 832 aa4.25□□□□□ -1.73
CHD9-213ENST00000564845 FOXD4L5Q5VV16 416 aaPredicted RBP4.25□□□□□ -1.73
CHD9-213ENST00000564845 FOXD4L4Q8WXT5 416 aaPredicted RBP4.25□□□□□ -1.73
CHD9-213ENST00000564845 DHX8Q14562 1220 aaKnown RBP4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms