RNA–Protein interactions for RNA: ENST00000560825.5

GABPB1-210, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 1,412 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-210ENST00000560825 TRPC5Q9UL62 973 aaPredicted RBP16.23■□□□□ 0.19
GABPB1-210ENST00000560825 FAM83GA6ND36 823 aa16.21■□□□□ 0.19
GABPB1-210ENST00000560825 NBPF8Q3BBV2 869 aa16.21■□□□□ 0.19
GABPB1-210ENST00000560825 COL14A1Q05707 1796 aaKnown RBP16.2■□□□□ 0.18
GABPB1-210ENST00000560825 ARHGEF10O15013 1369 aa16.2■□□□□ 0.18
GABPB1-210ENST00000560825 UNC5CLQ8IV45 518 aa16.19■□□□□ 0.18
GABPB1-210ENST00000560825 GJD4Q96KN9 370 aaPredicted RBP16.19■□□□□ 0.18
GABPB1-210ENST00000560825 NUTM2GQ5VZR2 741 aa16.19■□□□□ 0.18
GABPB1-210ENST00000560825 NGDNQ8NEJ9 315 aaKnown RBP16.19■□□□□ 0.18
GABPB1-210ENST00000560825 SRCAPQ6ZRS2 3230 aa16.18■□□□□ 0.18
GABPB1-210ENST00000560825 CABP2Q9NPB3 220 aa16.18■□□□□ 0.18
GABPB1-210ENST00000560825 POLR3AO14802 1390 aaPredicted RBP16.17■□□□□ 0.18
GABPB1-210ENST00000560825 EIF3AQ14152 1382 aaKnown RBP16.17■□□□□ 0.18
GABPB1-210ENST00000560825 GPRASP1Q5JY77 1395 aa16.17■□□□□ 0.18
GABPB1-210ENST00000560825 ACEP12821 1306 aa16.17■□□□□ 0.18
GABPB1-210ENST00000560825 PAK3O75914 559 aaPredicted RBP16.17■□□□□ 0.18
GABPB1-210ENST00000560825 NRKQ7Z2Y5 1582 aa16.17■□□□□ 0.18
GABPB1-210ENST00000560825 CENPJQ9HC77 1338 aaPredicted RBP16.16■□□□□ 0.18
GABPB1-210ENST00000560825 HAP1P54257 671 aaPredicted RBP16.16■□□□□ 0.18
GABPB1-210ENST00000560825 PPIP5K1Q6PFW1 1433 aa16.15■□□□□ 0.18
GABPB1-210ENST00000560825 AKAP12Q02952 1782 aa16.14■□□□□ 0.18
GABPB1-210ENST00000560825 PIK3C2AO00443 1686 aa16.14■□□□□ 0.17
GABPB1-210ENST00000560825 PLEKHG3A1L390 1219 aa16.12■□□□□ 0.17
GABPB1-210ENST00000560825 BTG4Q9NY30 223 aa16.12■□□□□ 0.17
GABPB1-210ENST00000560825 CCDC61Q9Y6R9 512 aa16.12■□□□□ 0.17
GABPB1-210ENST00000560825 LMO7Q8WWI1 1683 aa16.12■□□□□ 0.17
GABPB1-210ENST00000560825 ATAD2Q6PL18 1390 aa16.12■□□□□ 0.17
GABPB1-210ENST00000560825 SRPK2P78362 688 aaKnown RBP16.11■□□□□ 0.17
GABPB1-210ENST00000560825 CHRNA2Q15822 529 aa16.11■□□□□ 0.17
GABPB1-210ENST00000560825 VPS72Q15906 364 aa16.11■□□□□ 0.17
GABPB1-210ENST00000560825 ROCK2O75116 1388 aaKnown RBP16.11■□□□□ 0.17
GABPB1-210ENST00000560825 KIAA0232Q92628 1395 aa16.11■□□□□ 0.17
GABPB1-210ENST00000560825 THSD7AQ9UPZ6 1657 aa16.11■□□□□ 0.17
GABPB1-210ENST00000560825 RGPD5Q99666 1765 aa16.1■□□□□ 0.17
GABPB1-210ENST00000560825 SEPT12Q8IYM1 358 aa16.1■□□□□ 0.17
GABPB1-210ENST00000560825 ZC3H6P61129 1189 aaKnown RBP16.09■□□□□ 0.17
GABPB1-210ENST00000560825 CABP1Q9NZU7 370 aa16.09■□□□□ 0.17
GABPB1-210ENST00000560825 CAMTA1Q9Y6Y1 1673 aa16.09■□□□□ 0.17
GABPB1-210ENST00000560825 CCDC9Q9Y3X0 531 aaKnown RBP16.08■□□□□ 0.16
GABPB1-210ENST00000560825 MON2Q7Z3U7 1717 aa16.07■□□□□ 0.16
GABPB1-210ENST00000560825 ONECUT3O60422 494 aaPredicted RBP16.07■□□□□ 0.16
GABPB1-210ENST00000560825 FAM98CQ17RN3 349 aaKnown RBP16.07■□□□□ 0.16
GABPB1-210ENST00000560825 FAM182BQ5T319 152 aa16.07■□□□□ 0.16
GABPB1-210ENST00000560825 COL18A1P39060 1754 aa16.07■□□□□ 0.16
GABPB1-210ENST00000560825 USP6P35125 1406 aa16.07■□□□□ 0.16
GABPB1-210ENST00000560825 SSH2Q76I76 1423 aa16.07■□□□□ 0.16
GABPB1-210ENST00000560825 TRIM26Q12899 539 aaPredicted RBP16.05■□□□□ 0.16
GABPB1-210ENST00000560825 ABTB2Q8N961 1025 aa16.05■□□□□ 0.16
GABPB1-210ENST00000560825 PRDM11Q9NQV5 511 aa16.05■□□□□ 0.16
GABPB1-210ENST00000560825 USP19O94966 1318 aa16.05■□□□□ 0.16
GABPB1-210ENST00000560825 SPATA31A5Q5VU36 1347 aa16.04■□□□□ 0.16
GABPB1-210ENST00000560825 SPATA31A7Q8IWB4 1347 aa16.04■□□□□ 0.16
GABPB1-210ENST00000560825 SLIT3O75094 1523 aa16.04■□□□□ 0.16
GABPB1-210ENST00000560825 TNS1Q9HBL0 1735 aaKnown RBP16.04■□□□□ 0.16
GABPB1-210ENST00000560825 CD163L1Q9NR16 1453 aa16.03■□□□□ 0.16
GABPB1-210ENST00000560825 DEFB132Q7Z7B7 95 aa16.02■□□□□ 0.15
GABPB1-210ENST00000560825 STRN4Q9NRL3 753 aa16.02■□□□□ 0.15
GABPB1-210ENST00000560825 WNK3Q9BYP7 1800 aa16.01■□□□□ 0.15
GABPB1-210ENST00000560825 EVC2Q86UK5 1308 aa16.01■□□□□ 0.15
GABPB1-210ENST00000560825 TONSLQ96HA7 1378 aa16■□□□□ 0.15
GABPB1-210ENST00000560825 CPSF1Q10570 1443 aaKnown RBP16■□□□□ 0.15
GABPB1-210ENST00000560825 ZRANB1Q9UGI0 708 aa16■□□□□ 0.15
GABPB1-210ENST00000560825 SPATA31A1Q5TZJ5 1347 aa16■□□□□ 0.15
GABPB1-210ENST00000560825 GCP02774 474 aa15.99■□□□□ 0.15
GABPB1-210ENST00000560825 LARP1Q6PKG0 1096 aaKnown RBP15.99■□□□□ 0.15
GABPB1-210ENST00000560825 KRT27Q7Z3Y8 459 aa15.99■□□□□ 0.15
GABPB1-210ENST00000560825 CARD11Q9BXL7 1154 aa15.99■□□□□ 0.15
GABPB1-210ENST00000560825 USP35Q9P2H5 1018 aa15.99■□□□□ 0.15
GABPB1-210ENST00000560825 BLMP54132 1417 aaPredicted RBP15.99■□□□□ 0.15
GABPB1-210ENST00000560825 RGPD1P0DJD0 1748 aa15.98■□□□□ 0.15
GABPB1-210ENST00000560825 A0A0G2JS52 829 aa15.98■□□□□ 0.15
GABPB1-210ENST00000560825 MYT1Q01538 1121 aa15.98■□□□□ 0.15
GABPB1-210ENST00000560825 CPDO75976 1380 aa15.98■□□□□ 0.15
GABPB1-210ENST00000560825 COL5A2P05997 1499 aaPredicted RBP15.98■□□□□ 0.15
GABPB1-210ENST00000560825 NFAT5O94916 1531 aa15.98■□□□□ 0.15
GABPB1-210ENST00000560825 USP54Q70EL1 1684 aa15.98■□□□□ 0.15
GABPB1-210ENST00000560825 LTN1O94822 1766 aa15.98■□□□□ 0.15
GABPB1-210ENST00000560825 TTC21BQ7Z4L5 1316 aa15.96■□□□□ 0.15
GABPB1-210ENST00000560825 ZBTB7CA1YPR0 619 aa15.96■□□□□ 0.15
GABPB1-210ENST00000560825 NLRP6P59044 892 aa15.96■□□□□ 0.15
GABPB1-210ENST00000560825 PARP4Q9UKK3 1724 aaKnown RBP15.96■□□□□ 0.15
GABPB1-210ENST00000560825 SBNO2Q9Y2G9 1366 aa15.95■□□□□ 0.14
GABPB1-210ENST00000560825 AXIN2Q9Y2T1 843 aa15.95■□□□□ 0.14
GABPB1-210ENST00000560825 LRRC37A3O60309 1634 aa15.95■□□□□ 0.14
GABPB1-210ENST00000560825 NLRP13Q86W25 1043 aa15.94■□□□□ 0.14
GABPB1-210ENST00000560825 SOX12O15370 315 aa15.94■□□□□ 0.14
GABPB1-210ENST00000560825 TESK2Q96S53 571 aa15.94■□□□□ 0.14
GABPB1-210ENST00000560825 PEAK1Q9H792 1746 aa15.93■□□□□ 0.14
GABPB1-210ENST00000560825 KTN1Q86UP2 1357 aaKnown RBP15.93■□□□□ 0.14
GABPB1-210ENST00000560825 SBF2Q86WG5 1849 aa15.93■□□□□ 0.14
GABPB1-210ENST00000560825 SLC12A5Q9H2X9 1139 aa15.93■□□□□ 0.14
GABPB1-210ENST00000560825 BRD4O60885 1362 aaPredicted RBP15.91■□□□□ 0.14
GABPB1-210ENST00000560825 ST20-MTHFSA0A0A6YYL1 179 aa15.91■□□□□ 0.14
GABPB1-210ENST00000560825 NME9Q86XW9 330 aa15.91■□□□□ 0.14
GABPB1-210ENST00000560825 CCDC125Q86Z20 511 aa15.91■□□□□ 0.14
GABPB1-210ENST00000560825 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.91■□□□□ 0.14
GABPB1-210ENST00000560825 EVA1CP58658 441 aa15.9■□□□□ 0.14
GABPB1-210ENST00000560825 A0A1W2PP64 1363 aa15.9■□□□□ 0.14
GABPB1-210ENST00000560825 AATKQ6ZMQ8 1374 aa15.9■□□□□ 0.14
GABPB1-210ENST00000560825 MYOM1P52179 1685 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms