RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 MCM2P49736 904 aa16.4■□□□□ 0.22
CSPG4P12-202ENST00000559989 FMNL2Q96PY5 1086 aa16.4■□□□□ 0.22
CSPG4P12-202ENST00000559989 CRACR2AQ9BSW2 395 aa16.4■□□□□ 0.22
CSPG4P12-202ENST00000559989 KIAA1328Q86T90 577 aa16.4■□□□□ 0.22
CSPG4P12-202ENST00000559989 TAF4BQ92750 862 aa16.4■□□□□ 0.22
CSPG4P12-202ENST00000559989 MYBBP1AQ9BQG0 1328 aaKnown RBP16.4■□□□□ 0.22
CSPG4P12-202ENST00000559989 TRAK2O60296 914 aa16.39■□□□□ 0.21
CSPG4P12-202ENST00000559989 BAZ1BQ9UIG0 1483 aaKnown RBP16.39■□□□□ 0.21
CSPG4P12-202ENST00000559989 TRHP20396 242 aaPredicted RBP16.39■□□□□ 0.21
CSPG4P12-202ENST00000559989 WASHC2AQ641Q2 1341 aa16.38■□□□□ 0.21
CSPG4P12-202ENST00000559989 EIF2S2P20042 333 aaKnown RBP16.38■□□□□ 0.21
CSPG4P12-202ENST00000559989 BMS1Q14692 1282 aaKnown RBP16.38■□□□□ 0.21
CSPG4P12-202ENST00000559989 PKD2Q13563 968 aa16.38■□□□□ 0.21
CSPG4P12-202ENST00000559989 GGT6Q6P531 493 aa16.38■□□□□ 0.21
CSPG4P12-202ENST00000559989 ZNF397Q8NF99 534 aaPredicted RBP16.38■□□□□ 0.21
CSPG4P12-202ENST00000559989 API5Q9BZZ5 524 aaKnown RBP16.38■□□□□ 0.21
CSPG4P12-202ENST00000559989 GPATCH11Q8N954 259 aa16.38■□□□□ 0.21
CSPG4P12-202ENST00000559989 HIP1O00291 1037 aa16.38■□□□□ 0.21
CSPG4P12-202ENST00000559989 RRP7AQ9Y3A4 280 aaKnown RBP16.37■□□□□ 0.21
CSPG4P12-202ENST00000559989 EPB41L2O43491 1005 aaKnown RBP16.37■□□□□ 0.21
CSPG4P12-202ENST00000559989 PPM1FP49593 454 aaPredicted RBP16.36■□□□□ 0.21
CSPG4P12-202ENST00000559989 GIGYF2Q6Y7W6 1299 aaKnown RBP16.36■□□□□ 0.21
CSPG4P12-202ENST00000559989 FAM177A1Q8N128 213 aaPredicted RBP16.36■□□□□ 0.21
CSPG4P12-202ENST00000559989 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.36■□□□□ 0.21
CSPG4P12-202ENST00000559989 V9GYY5 206 aaPredicted RBP16.36■□□□□ 0.21
CSPG4P12-202ENST00000559989 MATR3P43243 847 aaKnown RBP eCLIP16.36■□□□□ 0.21
CSPG4P12-202ENST00000559989 CALCOCO1Q9P1Z2 691 aa16.36■□□□□ 0.21
CSPG4P12-202ENST00000559989 BCL2L13Q9BXK5 485 aa16.36■□□□□ 0.21
CSPG4P12-202ENST00000559989 TBC1D2BQ9UPU7 963 aa16.36■□□□□ 0.21
CSPG4P12-202ENST00000559989 NFKBIBQ15653 356 aa16.36■□□□□ 0.21
CSPG4P12-202ENST00000559989 MTMR7Q9Y216 660 aa16.35■□□□□ 0.21
CSPG4P12-202ENST00000559989 COG3Q96JB2 828 aa16.35■□□□□ 0.21
CSPG4P12-202ENST00000559989 CCDC113Q9H0I3 377 aa16.35■□□□□ 0.21
CSPG4P12-202ENST00000559989 SMC1AQ14683 1233 aaKnown RBP16.35■□□□□ 0.21
CSPG4P12-202ENST00000559989 STK38Q15208 465 aa16.35■□□□□ 0.21
CSPG4P12-202ENST00000559989 TNMDQ9H2S6 317 aa16.35■□□□□ 0.21
CSPG4P12-202ENST00000559989 POLR3GO15318 223 aaPredicted RBP16.35■□□□□ 0.21
CSPG4P12-202ENST00000559989 ERC1Q8IUD2 1116 aa16.35■□□□□ 0.21
CSPG4P12-202ENST00000559989 SSR1P43307 286 aaKnown RBP16.34■□□□□ 0.21
CSPG4P12-202ENST00000559989 CDC45O75419 566 aa16.34■□□□□ 0.21
CSPG4P12-202ENST00000559989 C6orf163Q5TEZ5 329 aa16.34■□□□□ 0.21
CSPG4P12-202ENST00000559989 COG6Q9Y2V7 657 aa16.34■□□□□ 0.21
CSPG4P12-202ENST00000559989 ZHX3Q9H4I2 956 aa16.34■□□□□ 0.21
CSPG4P12-202ENST00000559989 ELL2O00472 640 aaPredicted RBP16.33■□□□□ 0.2
CSPG4P12-202ENST00000559989 DZIP1LQ8IYY4 767 aaKnown RBP16.33■□□□□ 0.2
CSPG4P12-202ENST00000559989 TNIKQ9UKE5 1360 aa16.33■□□□□ 0.2
CSPG4P12-202ENST00000559989 DCAF8L1A6NGE4 600 aa16.33■□□□□ 0.2
CSPG4P12-202ENST00000559989 FERP16591 822 aa16.33■□□□□ 0.2
CSPG4P12-202ENST00000559989 AEBP1Q8IUX7 1158 aa16.33■□□□□ 0.2
CSPG4P12-202ENST00000559989 MAPK8IP2Q13387 824 aaPredicted RBP16.32■□□□□ 0.2
CSPG4P12-202ENST00000559989 AAMPQ13685 434 aa16.32■□□□□ 0.2
CSPG4P12-202ENST00000559989 NEUROD6Q96NK8 337 aa16.32■□□□□ 0.2
CSPG4P12-202ENST00000559989 IMMTQ16891 758 aaKnown RBP16.32■□□□□ 0.2
CSPG4P12-202ENST00000559989 KDM4AO75164 1064 aa16.32■□□□□ 0.2
CSPG4P12-202ENST00000559989 PLIN1O60240 522 aa16.32■□□□□ 0.2
CSPG4P12-202ENST00000559989 IFFO1Q0D2I5 559 aa16.32■□□□□ 0.2
CSPG4P12-202ENST00000559989 RNF187Q5TA31 235 aaPredicted RBP16.32■□□□□ 0.2
CSPG4P12-202ENST00000559989 CASQ1P31415 396 aa16.32■□□□□ 0.2
CSPG4P12-202ENST00000559989 LUZP1Q86V48 1076 aa16.32■□□□□ 0.2
CSPG4P12-202ENST00000559989 UBE4AQ14139 1066 aa16.31■□□□□ 0.2
CSPG4P12-202ENST00000559989 HOMER2Q9NSB8 354 aa16.31■□□□□ 0.2
CSPG4P12-202ENST00000559989 SMTNL1A8MU46 457 aa16.31■□□□□ 0.2
CSPG4P12-202ENST00000559989 ANKRD1Q15327 319 aa16.31■□□□□ 0.2
CSPG4P12-202ENST00000559989 EXOC6Q8TAG9 804 aa16.31■□□□□ 0.2
CSPG4P12-202ENST00000559989 GOPCQ9HD26 462 aa16.31■□□□□ 0.2
CSPG4P12-202ENST00000559989 BMP2KQ9NSY1 1161 aaPredicted RBP16.3■□□□□ 0.2
CSPG4P12-202ENST00000559989 SEPT6Q14141 434 aa16.3■□□□□ 0.2
CSPG4P12-202ENST00000559989 PRPF40AO75400 957 aaKnown RBP16.3■□□□□ 0.2
CSPG4P12-202ENST00000559989 FKBP5Q13451 457 aaPredicted RBP16.3■□□□□ 0.2
CSPG4P12-202ENST00000559989 UACAQ9BZF9 1416 aa16.3■□□□□ 0.2
CSPG4P12-202ENST00000559989 HOOK3Q86VS8 718 aa16.29■□□□□ 0.2
CSPG4P12-202ENST00000559989 UBXN4Q92575 508 aa16.29■□□□□ 0.2
CSPG4P12-202ENST00000559989 KIF2AO00139 706 aaPredicted RBP16.29■□□□□ 0.2
CSPG4P12-202ENST00000559989 PUS7Q96PZ0 661 aaKnown RBP16.29■□□□□ 0.2
CSPG4P12-202ENST00000559989 CCDC57Q2TAC2 916 aa16.29■□□□□ 0.2
CSPG4P12-202ENST00000559989 ATP2B1P20020 1258 aa16.29■□□□□ 0.2
CSPG4P12-202ENST00000559989 NOL7Q9UMY1 257 aaKnown RBP16.29■□□□□ 0.2
CSPG4P12-202ENST00000559989 RIC3Q7Z5B4 369 aa16.28■□□□□ 0.2
CSPG4P12-202ENST00000559989 TRIM22Q8IYM9 498 aa16.28■□□□□ 0.2
CSPG4P12-202ENST00000559989 TIGD1Q96MW7 591 aa16.28■□□□□ 0.2
CSPG4P12-202ENST00000559989 SPECC1LQ69YQ0 1117 aa16.28■□□□□ 0.2
CSPG4P12-202ENST00000559989 NECTIN2Q92692 538 aa16.28■□□□□ 0.2
CSPG4P12-202ENST00000559989 TAOK3Q9H2K8 898 aa16.28■□□□□ 0.2
CSPG4P12-202ENST00000559989 CEBPZQ03701 1054 aaKnown RBP16.27■□□□□ 0.2
CSPG4P12-202ENST00000559989 ZBED9Q6R2W3 1325 aa16.27■□□□□ 0.2
CSPG4P12-202ENST00000559989 SYTL4Q96C24 671 aaPredicted RBP16.27■□□□□ 0.2
CSPG4P12-202ENST00000559989 FSD1Q9BTV5 496 aa16.27■□□□□ 0.2
CSPG4P12-202ENST00000559989 PPP1R12BO60237 982 aaPredicted RBP16.27■□□□□ 0.19
CSPG4P12-202ENST00000559989 SOGA3Q5TF21 947 aa16.27■□□□□ 0.19
CSPG4P12-202ENST00000559989 GSTTP1A0A1W2PQM5 241 aa16.27■□□□□ 0.19
CSPG4P12-202ENST00000559989 MPHOSPH10O00566 681 aaKnown RBP16.27■□□□□ 0.19
CSPG4P12-202ENST00000559989 SPA17Q15506 151 aa16.26■□□□□ 0.19
CSPG4P12-202ENST00000559989 IPO4Q8TEX9 1081 aaKnown RBP16.26■□□□□ 0.19
CSPG4P12-202ENST00000559989 NAP1L3Q99457 506 aaPredicted RBP16.26■□□□□ 0.19
CSPG4P12-202ENST00000559989 ERCC6Q03468 1493 aa16.26■□□□□ 0.19
CSPG4P12-202ENST00000559989 IBSPP21815 317 aaPredicted RBP16.26■□□□□ 0.19
CSPG4P12-202ENST00000559989 ARHGAP29Q52LW3 1261 aa16.26■□□□□ 0.19
CSPG4P12-202ENST00000559989 CEP57L1Q8IYX8 460 aa16.26■□□□□ 0.19
CSPG4P12-202ENST00000559989 ME1P48163 572 aa16.26■□□□□ 0.19
CSPG4P12-202ENST00000559989 NUP155O75694 1391 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 184.7 ms