RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 PMFBP1Q8TBY8 1022 aa18.59■□□□□ 0.57
SHMT2-230ENST00000557427 PPP1R1BQ9UD71 204 aaPredicted RBP18.59■□□□□ 0.57
SHMT2-230ENST00000557427 YTHDC2Q9H6S0 1430 aaKnown RBP18.58■□□□□ 0.57
SHMT2-230ENST00000557427 TRPM3Q9HCF6 1732 aaPredicted RBP18.57■□□□□ 0.56
SHMT2-230ENST00000557427 SPATA31A1Q5TZJ5 1347 aa18.57■□□□□ 0.56
SHMT2-230ENST00000557427 SIRT1Q96EB6 747 aa18.57■□□□□ 0.56
SHMT2-230ENST00000557427 UTRNP46939 3433 aa18.57■□□□□ 0.56
SHMT2-230ENST00000557427 NBPF8Q3BBV2 869 aa18.56■□□□□ 0.56
SHMT2-230ENST00000557427 NBPF14Q5TI25 921 aa18.56■□□□□ 0.56
SHMT2-230ENST00000557427 ALS2Q96Q42 1657 aa18.55■□□□□ 0.56
SHMT2-230ENST00000557427 DCAF8L1A6NGE4 600 aa18.55■□□□□ 0.56
SHMT2-230ENST00000557427 SENP3-EIF4A1A0A087X0R7 540 aa18.54■□□□□ 0.56
SHMT2-230ENST00000557427 RGL3Q3MIN7 710 aa18.54■□□□□ 0.56
SHMT2-230ENST00000557427 PIK3C2GO75747 1445 aa18.53■□□□□ 0.56
SHMT2-230ENST00000557427 CRYBG1Q9Y4K1 1723 aa18.53■□□□□ 0.56
SHMT2-230ENST00000557427 SPATA31E1Q6ZUB1 1445 aa18.51■□□□□ 0.55
SHMT2-230ENST00000557427 SAFB2Q14151 953 aaKnown RBP eCLIP18.51■□□□□ 0.55
SHMT2-230ENST00000557427 PRDM11Q9NQV5 511 aa18.51■□□□□ 0.55
SHMT2-230ENST00000557427 SLC4A1APQ9BWU0 796 aaKnown RBP18.5■□□□□ 0.55
SHMT2-230ENST00000557427 ANKRD30BQ9BXX2 1392 aa18.5■□□□□ 0.55
SHMT2-230ENST00000557427 C1QTNF8P60827 252 aa18.49■□□□□ 0.55
SHMT2-230ENST00000557427 CHRNA2Q15822 529 aa18.49■□□□□ 0.55
SHMT2-230ENST00000557427 PRAM1Q96QH2 718 aa18.49■□□□□ 0.55
SHMT2-230ENST00000557427 PDGFDQ9GZP0 370 aaPredicted RBP18.49■□□□□ 0.55
SHMT2-230ENST00000557427 STRN4Q9NRL3 753 aa18.49■□□□□ 0.55
SHMT2-230ENST00000557427 ANKARQ7Z5J8 1434 aa18.49■□□□□ 0.55
SHMT2-230ENST00000557427 ACIN1Q9UKV3 1341 aaKnown RBP18.49■□□□□ 0.55
SHMT2-230ENST00000557427 USP35Q9P2H5 1018 aa18.48■□□□□ 0.55
SHMT2-230ENST00000557427 KIAA0232Q92628 1395 aa18.47■□□□□ 0.55
SHMT2-230ENST00000557427 C14orf93Q9H972 538 aaKnown RBP18.47■□□□□ 0.55
SHMT2-230ENST00000557427 PRR36Q9H6K5 1346 aa18.47■□□□□ 0.55
SHMT2-230ENST00000557427 PDE3BQ13370 1112 aa18.46■□□□□ 0.55
SHMT2-230ENST00000557427 BARGINQ6ZT62 677 aa18.46■□□□□ 0.55
SHMT2-230ENST00000557427 NRKQ7Z2Y5 1582 aa18.46■□□□□ 0.55
SHMT2-230ENST00000557427 GPRASP1Q5JY77 1395 aa18.45■□□□□ 0.54
SHMT2-230ENST00000557427 ANO8Q9HCE9 1232 aaPredicted RBP18.45■□□□□ 0.54
SHMT2-230ENST00000557427 CASZ1Q86V15 1759 aa18.45■□□□□ 0.54
SHMT2-230ENST00000557427 CFAP70Q5T0N1 1121 aa18.44■□□□□ 0.54
SHMT2-230ENST00000557427 PTGER2P43116 358 aa18.43■□□□□ 0.54
SHMT2-230ENST00000557427 ZC3H6P61129 1189 aaKnown RBP18.42■□□□□ 0.54
SHMT2-230ENST00000557427 DHX57Q6P158 1386 aaKnown RBP18.42■□□□□ 0.54
SHMT2-230ENST00000557427 SSH2Q76I76 1423 aa18.41■□□□□ 0.54
SHMT2-230ENST00000557427 MYOM1P52179 1685 aa18.41■□□□□ 0.54
SHMT2-230ENST00000557427 PAK3O75914 559 aaPredicted RBP18.41■□□□□ 0.54
SHMT2-230ENST00000557427 LARP1Q6PKG0 1096 aaKnown RBP18.41■□□□□ 0.54
SHMT2-230ENST00000557427 HIRIP3Q9BW71 556 aaPredicted RBP18.41■□□□□ 0.54
SHMT2-230ENST00000557427 ZBTB7AO95365 584 aa18.4■□□□□ 0.54
SHMT2-230ENST00000557427 PTF1AQ7RTS3 328 aa18.39■□□□□ 0.53
SHMT2-230ENST00000557427 PHRF1Q9P1Y6 1649 aaKnown RBP18.38■□□□□ 0.53
SHMT2-230ENST00000557427 PROM2Q8N271 834 aa18.38■□□□□ 0.53
SHMT2-230ENST00000557427 TCP11L2Q8N4U5 519 aa18.38■□□□□ 0.53
SHMT2-230ENST00000557427 SYT17Q9BSW7 474 aa18.38■□□□□ 0.53
SHMT2-230ENST00000557427 POGKQ9P215 609 aa18.38■□□□□ 0.53
SHMT2-230ENST00000557427 PLSCR1O15162 318 aa18.37■□□□□ 0.53
SHMT2-230ENST00000557427 EVA1CP58658 441 aa18.37■□□□□ 0.53
SHMT2-230ENST00000557427 FHDC1Q9C0D6 1143 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-230ENST00000557427 ATF5Q9Y2D1 282 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-230ENST00000557427 DLC1Q96QB1 1528 aa18.37■□□□□ 0.53
SHMT2-230ENST00000557427 CHD4Q14839 1912 aa18.36■□□□□ 0.53
SHMT2-230ENST00000557427 NUTM2GQ5VZR2 741 aa18.36■□□□□ 0.53
SHMT2-230ENST00000557427 NGDNQ8NEJ9 315 aaKnown RBP18.36■□□□□ 0.53
SHMT2-230ENST00000557427 PEAK1Q9H792 1746 aa18.36■□□□□ 0.53
SHMT2-230ENST00000557427 TULP4Q9NRJ4 1543 aa18.35■□□□□ 0.53
SHMT2-230ENST00000557427 MINK1Q8N4C8 1332 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-230ENST00000557427 CEP350Q5VT06 3117 aa18.35■□□□□ 0.53
SHMT2-230ENST00000557427 RGPD3A6NKT7 1758 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-230ENST00000557427 RGPD4Q7Z3J3 1758 aa18.35■□□□□ 0.53
SHMT2-230ENST00000557427 PARP4Q9UKK3 1724 aaKnown RBP18.33■□□□□ 0.52
SHMT2-230ENST00000557427 WASLO00401 505 aaPredicted RBP18.33■□□□□ 0.52
SHMT2-230ENST00000557427 SGIP1Q9BQI5 828 aa18.33■□□□□ 0.52
SHMT2-230ENST00000557427 LMO7Q8WWI1 1683 aa18.32■□□□□ 0.52
SHMT2-230ENST00000557427 ZEB1P37275 1124 aaPredicted RBP18.32■□□□□ 0.52
SHMT2-230ENST00000557427 SBF2Q86WG5 1849 aa18.32■□□□□ 0.52
SHMT2-230ENST00000557427 MPHOSPH9Q99550 1183 aa18.31■□□□□ 0.52
SHMT2-230ENST00000557427 BCL11BQ9C0K0 894 aaPredicted RBP18.31■□□□□ 0.52
SHMT2-230ENST00000557427 TRAK1Q9UPV9 953 aa18.31■□□□□ 0.52
SHMT2-230ENST00000557427 THRAP3Q9Y2W1 955 aaKnown RBP18.31■□□□□ 0.52
SHMT2-230ENST00000557427 ADGRB1O14514 1584 aa18.3■□□□□ 0.52
SHMT2-230ENST00000557427 OVOS2A0A0G2JMS6 1433 aa18.3■□□□□ 0.52
SHMT2-230ENST00000557427 OVOS2A0A0J9YW53 1432 aa18.3■□□□□ 0.52
SHMT2-230ENST00000557427 OVOS2Q6IE36 1432 aa18.3■□□□□ 0.52
SHMT2-230ENST00000557427 EIF3AQ14152 1382 aaKnown RBP18.3■□□□□ 0.52
SHMT2-230ENST00000557427 C11orf95C9JLR9 678 aaPredicted RBP18.28■□□□□ 0.52
SHMT2-230ENST00000557427 CPDO75976 1380 aa18.28■□□□□ 0.52
SHMT2-230ENST00000557427 ATP7BP35670 1465 aa18.27■□□□□ 0.52
SHMT2-230ENST00000557427 GIGYF1O75420 1035 aaPredicted RBP18.26■□□□□ 0.51
SHMT2-230ENST00000557427 COL5A2P05997 1499 aaPredicted RBP18.26■□□□□ 0.51
SHMT2-230ENST00000557427 LRRC37A3O60309 1634 aa18.25■□□□□ 0.51
SHMT2-230ENST00000557427 SLC15A2Q16348 729 aa18.25■□□□□ 0.51
SHMT2-230ENST00000557427 NUDT16Q96DE0 195 aaKnown RBP18.25■□□□□ 0.51
SHMT2-230ENST00000557427 MTFR1LQ9H019 292 aa18.25■□□□□ 0.51
SHMT2-230ENST00000557427 USP19O94966 1318 aa18.23■□□□□ 0.51
SHMT2-230ENST00000557427 TXNRD1Q16881 649 aa18.23■□□□□ 0.51
SHMT2-230ENST00000557427 MARCH10Q8NA82 808 aaPredicted RBP18.23■□□□□ 0.51
SHMT2-230ENST00000557427 STK32BQ9NY57 414 aa18.23■□□□□ 0.51
SHMT2-230ENST00000557427 CRB1P82279 1406 aa18.23■□□□□ 0.51
SHMT2-230ENST00000557427 DDB1Q16531 1140 aa18.22■□□□□ 0.51
SHMT2-230ENST00000557427 ARXQ96QS3 562 aa18.22■□□□□ 0.51
SHMT2-230ENST00000557427 POLR3AO14802 1390 aaPredicted RBP18.21■□□□□ 0.51
SHMT2-230ENST00000557427 ACEP12821 1306 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms