RNA–Protein interactions for RNA: ENST00000553612.5

GTF2A1-203, Transcript of general transcription factor IIA subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF2A1, Length 6,306 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-203ENST00000553612 PRKRIP1Q9H875 184 aaPredicted RBP10.75□□□□□ -0.69
GTF2A1-203ENST00000553612 ECM2O94769 699 aaPredicted RBP10.75□□□□□ -0.69
GTF2A1-203ENST00000553612 DHX57Q6P158 1386 aaKnown RBP10.75□□□□□ -0.69
GTF2A1-203ENST00000553612 PPP1R15AO75807 674 aaPredicted RBP10.75□□□□□ -0.69
GTF2A1-203ENST00000553612 RAD51AP2Q09MP3 1159 aa10.75□□□□□ -0.69
GTF2A1-203ENST00000553612 FAM177A1Q8N128 213 aaPredicted RBP10.75□□□□□ -0.69
GTF2A1-203ENST00000553612 RIOK3O14730 519 aaKnown RBP10.74□□□□□ -0.69
GTF2A1-203ENST00000553612 CLNS1AP54105 237 aaKnown RBP10.74□□□□□ -0.69
GTF2A1-203ENST00000553612 TMCO3Q6UWJ1 677 aa10.74□□□□□ -0.69
GTF2A1-203ENST00000553612 SH3BP1Q9Y3L3 701 aa10.74□□□□□ -0.69
GTF2A1-203ENST00000553612 KANK4Q5T7N3 995 aaPredicted RBP10.74□□□□□ -0.69
GTF2A1-203ENST00000553612 NUTM2GQ5VZR2 741 aa10.74□□□□□ -0.69
GTF2A1-203ENST00000553612 SYT10Q6XYQ8 523 aa10.74□□□□□ -0.69
GTF2A1-203ENST00000553612 YY1AP1Q9H869 796 aa10.74□□□□□ -0.69
GTF2A1-203ENST00000553612 RBM27Q9P2N5 1060 aaKnown RBP10.74□□□□□ -0.69
GTF2A1-203ENST00000553612 CHRM1P11229 460 aaPredicted RBP10.73□□□□□ -0.69
GTF2A1-203ENST00000553612 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.73□□□□□ -0.691e-7■■□□□ 12.8
GTF2A1-203ENST00000553612 IPO7O95373 1038 aaKnown RBP10.73□□□□□ -0.69
GTF2A1-203ENST00000553612 HMMRO75330 724 aa10.73□□□□□ -0.69
GTF2A1-203ENST00000553612 CCDC102AQ96A19 550 aa10.73□□□□□ -0.69
GTF2A1-203ENST00000553612 NOL7Q9UMY1 257 aaKnown RBP10.73□□□□□ -0.69
GTF2A1-203ENST00000553612 BRMS1Q9HCU9 246 aa10.73□□□□□ -0.69
GTF2A1-203ENST00000553612 GOLGA6L19H0YKK7 550 aa10.72□□□□□ -0.69
GTF2A1-203ENST00000553612 CARD10Q9BWT7 1032 aa10.72□□□□□ -0.69
GTF2A1-203ENST00000553612 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.72□□□□□ -0.693e-7■□□□□ 10.2
GTF2A1-203ENST00000553612 BMS1Q14692 1282 aaKnown RBP10.72□□□□□ -0.69
GTF2A1-203ENST00000553612 DDX11Q96FC9 970 aa10.72□□□□□ -0.69
GTF2A1-203ENST00000553612 TBC1D2Q9BYX2 928 aa10.72□□□□□ -0.69
GTF2A1-203ENST00000553612 USP25Q9UHP3 1055 aa10.72□□□□□ -0.69
GTF2A1-203ENST00000553612 RRP7AQ9Y3A4 280 aaKnown RBP10.72□□□□□ -0.69
GTF2A1-203ENST00000553612 STK31Q9BXU1 1019 aa10.72□□□□□ -0.69
GTF2A1-203ENST00000553612 CEP120Q8N960 986 aa10.72□□□□□ -0.69
GTF2A1-203ENST00000553612 RWDD1Q9H446 243 aaPredicted RBP10.72□□□□□ -0.69
GTF2A1-203ENST00000553612 FEZ2Q9UHY8 353 aaPredicted RBP10.72□□□□□ -0.69
GTF2A1-203ENST00000553612 ANKRD18AQ8IVF6 992 aa10.71□□□□□ -0.69
GTF2A1-203ENST00000553612 CCDC27Q2M243 656 aa10.71□□□□□ -0.69
GTF2A1-203ENST00000553612 TNPO1Q92973 898 aaKnown RBP10.71□□□□□ -0.69
GTF2A1-203ENST00000553612 TTC36A6NLP5 189 aa10.71□□□□□ -0.69
GTF2A1-203ENST00000553612 TRIM66O15016 1216 aa10.71□□□□□ -0.69
GTF2A1-203ENST00000553612 DBN1Q16643 649 aa10.71□□□□□ -0.69
GTF2A1-203ENST00000553612 WDR63Q8IWG1 891 aa10.71□□□□□ -0.69
GTF2A1-203ENST00000553612 VGFO15240 615 aaPredicted RBP10.71□□□□□ -0.7
GTF2A1-203ENST00000553612 MCM5P33992 734 aa10.71□□□□□ -0.7
GTF2A1-203ENST00000553612 FMNL3Q8IVF7 1028 aa10.71□□□□□ -0.7
GTF2A1-203ENST00000553612 PANK1Q8TE04 598 aa10.7□□□□□ -0.7
GTF2A1-203ENST00000553612 SF3A1Q15459 793 aaKnown RBP10.7□□□□□ -0.7
GTF2A1-203ENST00000553612 ZSCAN26Q16670 478 aa10.7□□□□□ -0.7
GTF2A1-203ENST00000553612 SPATS2LQ9NUQ6 558 aaKnown RBP10.7□□□□□ -0.7
GTF2A1-203ENST00000553612 RAB3GAP2Q9H2M9 1393 aa10.7□□□□□ -0.7
GTF2A1-203ENST00000553612 DYTNA2CJ06 578 aa10.7□□□□□ -0.7
GTF2A1-203ENST00000553612 ANKRD65E5RJM6 399 aa10.7□□□□□ -0.7
GTF2A1-203ENST00000553612 KIF1CO43896 1103 aaKnown RBP10.7□□□□□ -0.7
GTF2A1-203ENST00000553612 CAPN2P17655 700 aa10.7□□□□□ -0.7
GTF2A1-203ENST00000553612 RANBP1P43487 201 aa10.7□□□□□ -0.7
GTF2A1-203ENST00000553612 KIF18AQ8NI77 898 aa10.7□□□□□ -0.7
GTF2A1-203ENST00000553612 ZNF428Q96B54 188 aa10.7□□□□□ -0.7
GTF2A1-203ENST00000553612 SMC2O95347 1197 aa10.7□□□□□ -0.7
GTF2A1-203ENST00000553612 FOSBP53539 338 aa10.69□□□□□ -0.7
GTF2A1-203ENST00000553612 RBM5P52756 815 aaKnown RBP eCLIP10.69□□□□□ -0.7
GTF2A1-203ENST00000553612 RBBP5Q15291 538 aaKnown RBP10.69□□□□□ -0.7
GTF2A1-203ENST00000553612 NFXL1Q6ZNB6 911 aa10.69□□□□□ -0.7
GTF2A1-203ENST00000553612 RMI1Q9H9A7 625 aa10.69□□□□□ -0.7
GTF2A1-203ENST00000553612 ARMC9Q7Z3E5 817 aa10.68□□□□□ -0.7
GTF2A1-203ENST00000553612 RNF187Q5TA31 235 aaPredicted RBP10.68□□□□□ -0.7
GTF2A1-203ENST00000553612 FAM184AQ8NB25 1140 aa10.68□□□□□ -0.7
GTF2A1-203ENST00000553612 RUFY1Q96T51 708 aa10.68□□□□□ -0.7
GTF2A1-203ENST00000553612 MYO1CO00159 1063 aa10.68□□□□□ -0.7
GTF2A1-203ENST00000553612 CCDC181Q5TID7 509 aa10.68□□□□□ -0.7
GTF2A1-203ENST00000553612 PPM1EQ8WY54 764 aa10.68□□□□□ -0.7
GTF2A1-203ENST00000553612 MYO6Q9UM54 1294 aa10.68□□□□□ -0.7
GTF2A1-203ENST00000553612 PPP6R1Q9UPN7 881 aa10.68□□□□□ -0.7
GTF2A1-203ENST00000553612 IRF6O14896 467 aa10.68□□□□□ -0.7
GTF2A1-203ENST00000553612 NBPF20Q3BBV1 942 aa10.68□□□□□ -0.7
GTF2A1-203ENST00000553612 RRP15Q9Y3B9 282 aaKnown RBP10.68□□□□□ -0.7
GTF2A1-203ENST00000553612 NAIF1Q69YI7 327 aaPredicted RBP10.67□□□□□ -0.7
GTF2A1-203ENST00000553612 CHGAP10645 457 aaKnown RBP10.67□□□□□ -0.7
GTF2A1-203ENST00000553612 TRIM5Q9C035 493 aa10.67□□□□□ -0.7
GTF2A1-203ENST00000553612 SSBP05455 408 aaKnown RBP eCLIP10.67□□□□□ -0.7
GTF2A1-203ENST00000553612 PSEN1P49768 467 aa10.67□□□□□ -0.7
GTF2A1-203ENST00000553612 C20orf194Q5TEA3 1177 aa10.67□□□□□ -0.7
GTF2A1-203ENST00000553612 SCLT1Q96NL6 688 aa10.67□□□□□ -0.7
GTF2A1-203ENST00000553612 TRMT1Q9NXH9 659 aaKnown RBP10.67□□□□□ -0.7
GTF2A1-203ENST00000553612 TERF2Q15554 542 aa10.67□□□□□ -0.7
GTF2A1-203ENST00000553612 ANKRD45Q5TZF3 282 aa10.67□□□□□ -0.7
GTF2A1-203ENST00000553612 PMFBP1Q8TBY8 1022 aa10.67□□□□□ -0.7
GTF2A1-203ENST00000553612 GAS2L3Q86XJ1 694 aa10.66□□□□□ -0.7
GTF2A1-203ENST00000553612 KIAA1328Q86T90 577 aa10.66□□□□□ -0.7
GTF2A1-203ENST00000553612 ZNF397Q8NF99 534 aaPredicted RBP10.66□□□□□ -0.7
GTF2A1-203ENST00000553612 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.66□□□□□ -0.7
GTF2A1-203ENST00000553612 SCP2P22307 547 aa10.66□□□□□ -0.7
GTF2A1-203ENST00000553612 SSFA2P28290 1259 aa10.66□□□□□ -0.7
GTF2A1-203ENST00000553612 MECOMQ03112 1051 aa10.66□□□□□ -0.7
GTF2A1-203ENST00000553612 NBPF9Q3BBW0 867 aa10.66□□□□□ -0.7
GTF2A1-203ENST00000553612 BRPF1P55201 1214 aaPredicted RBP10.66□□□□□ -0.7
GTF2A1-203ENST00000553612 ZSCAN23Q3MJ62 389 aa10.66□□□□□ -0.7
GTF2A1-203ENST00000553612 BECN2A8MW95 431 aa10.66□□□□□ -0.7
GTF2A1-203ENST00000553612 IVLP07476 585 aa10.66□□□□□ -0.7
GTF2A1-203ENST00000553612 ATP2B2Q01814 1243 aa10.66□□□□□ -0.7
GTF2A1-203ENST00000553612 UBXN4Q92575 508 aa10.66□□□□□ -0.7
GTF2A1-203ENST00000553612 RABEP1Q15276 862 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms