RNA–Protein interactions for RNA: ENST00000548821.1

GCN1-205, Transcript of GCN1, eIF2 alpha kinase activator homolog, human

TSL 3

Gene GCN1, Length 504 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GCN1-205	ENST00000548821	ABTB2	Q8N961	1025 aa		13.78	□□□□□ -0.2
GCN1-205	ENST00000548821	PRR36	Q9H6K5	1346 aa		13.78	□□□□□ -0.2
GCN1-205	ENST00000548821	BLM	P54132	1417 aa	Predicted RBP	13.78	□□□□□ -0.2
GCN1-205	ENST00000548821	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.78	□□□□□ -0.2
GCN1-205	ENST00000548821	ACE	P12821	1306 aa		13.77	□□□□□ -0.21
GCN1-205	ENST00000548821	ATP7B	P35670	1465 aa		13.77	□□□□□ -0.21
GCN1-205	ENST00000548821	EVC2	Q86UK5	1308 aa		13.77	□□□□□ -0.21
GCN1-205	ENST00000548821	KIAA1210	Q9ULL0	1709 aa		13.76	□□□□□ -0.21
GCN1-205	ENST00000548821	C11orf95	C9JLR9	678 aa	Predicted RBP	13.76	□□□□□ -0.21
GCN1-205	ENST00000548821	SLC24A1	O60721	1099 aa		13.76	□□□□□ -0.21
GCN1-205	ENST00000548821	ZNF692	Q9BU19	519 aa	Predicted RBP	13.76	□□□□□ -0.21
GCN1-205	ENST00000548821	POLR3A	O14802	1390 aa	Predicted RBP	13.75	□□□□□ -0.21
GCN1-205	ENST00000548821	BAG6	P46379	1132 aa		13.75	□□□□□ -0.21
GCN1-205	ENST00000548821	NBPF1	Q3BBV0	1214 aa		13.75	□□□□□ -0.21
GCN1-205	ENST00000548821	L3MBTL2	Q969R5	705 aa		13.75	□□□□□ -0.21
GCN1-205	ENST00000548821	NWD2	Q9ULI1	1742 aa		13.75	□□□□□ -0.21
GCN1-205	ENST00000548821	FAM98C	Q17RN3	349 aa	Known RBP	13.74	□□□□□ -0.21
GCN1-205	ENST00000548821	RGPD8	O14715	1765 aa	Predicted RBP	13.73	□□□□□ -0.21
GCN1-205	ENST00000548821	ITSN1	Q15811	1721 aa		13.73	□□□□□ -0.21
GCN1-205	ENST00000548821	NEUROD1	Q13562	356 aa		13.73	□□□□□ -0.21
GCN1-205	ENST00000548821	SPATA31A5	Q5VU36	1347 aa		13.72	□□□□□ -0.21
GCN1-205	ENST00000548821	SPATA31A7	Q8IWB4	1347 aa		13.72	□□□□□ -0.21
GCN1-205	ENST00000548821	THRAP3	Q9Y2W1	955 aa	Known RBP	13.72	□□□□□ -0.21
GCN1-205	ENST00000548821	COL14A1	Q05707	1796 aa	Known RBP	13.71	□□□□□ -0.21
GCN1-205	ENST00000548821	ZC3H6	P61129	1189 aa	Known RBP	13.71	□□□□□ -0.21
GCN1-205	ENST00000548821	PDE3B	Q13370	1112 aa		13.71	□□□□□ -0.21
GCN1-205	ENST00000548821	ROCK2	O75116	1388 aa	Known RBP	13.71	□□□□□ -0.22
GCN1-205	ENST00000548821	FAM196A	Q6ZSG2	479 aa		13.7	□□□□□ -0.22
GCN1-205	ENST00000548821	CABP2	Q9NPB3	220 aa		13.7	□□□□□ -0.22
GCN1-205	ENST00000548821	STRN4	Q9NRL3	753 aa		13.7	□□□□□ -0.22
GCN1-205	ENST00000548821	CABP1	Q9NZU7	370 aa		13.7	□□□□□ -0.22
GCN1-205	ENST00000548821	PPIP5K1	Q6PFW1	1433 aa		13.7	□□□□□ -0.22
GCN1-205	ENST00000548821	GLI3	P10071	1580 aa		13.7	□□□□□ -0.22
GCN1-205	ENST00000548821	KIAA0232	Q92628	1395 aa		13.7	□□□□□ -0.22
GCN1-205	ENST00000548821	GC	P02774	474 aa		13.69	□□□□□ -0.22
GCN1-205	ENST00000548821	NLRP6	P59044	892 aa		13.69	□□□□□ -0.22
GCN1-205	ENST00000548821	BARGIN	Q6ZT62	677 aa		13.69	□□□□□ -0.22
GCN1-205	ENST00000548821	KCNH5	Q8NCM2	988 aa		13.69	□□□□□ -0.22
GCN1-205	ENST00000548821	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.69	□□□□□ -0.22
GCN1-205	ENST00000548821	SPATA31A1	Q5TZJ5	1347 aa		13.68	□□□□□ -0.22
GCN1-205	ENST00000548821	NUTM2G	Q5VZR2	741 aa		13.68	□□□□□ -0.22
GCN1-205	ENST00000548821	CPD	O75976	1380 aa		13.68	□□□□□ -0.22
GCN1-205	ENST00000548821	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.67	□□□□□ -0.22
GCN1-205	ENST00000548821	ALS2	Q96Q42	1657 aa		13.67	□□□□□ -0.22
GCN1-205	ENST00000548821	CHRNA2	Q15822	529 aa		13.67	□□□□□ -0.22
GCN1-205	ENST00000548821	TCP11L2	Q8N4U5	519 aa		13.67	□□□□□ -0.22
GCN1-205	ENST00000548821	SIN3A	Q96ST3	1273 aa		13.67	□□□□□ -0.22
GCN1-205	ENST00000548821	PLCH1	Q4KWH8	1693 aa		13.66	□□□□□ -0.22
GCN1-205	ENST00000548821	USP19	O94966	1318 aa		13.65	□□□□□ -0.22
GCN1-205	ENST00000548821	TTC21A	Q8NDW8	1320 aa		13.65	□□□□□ -0.22
GCN1-205	ENST00000548821	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.65	□□□□□ -0.22
GCN1-205	ENST00000548821	CARD11	Q9BXL7	1154 aa		13.65	□□□□□ -0.22
GCN1-205	ENST00000548821	USP35	Q9P2H5	1018 aa		13.65	□□□□□ -0.22
GCN1-205	ENST00000548821	TONSL	Q96HA7	1378 aa		13.65	□□□□□ -0.22
GCN1-205	ENST00000548821	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.63	□□□□□ -0.23
GCN1-205	ENST00000548821	DEFB132	Q7Z7B7	95 aa		13.63	□□□□□ -0.23
GCN1-205	ENST00000548821	PUS7	Q96PZ0	661 aa	Known RBP	13.63	□□□□□ -0.23
GCN1-205	ENST00000548821	ABCA3	Q99758	1704 aa		13.63	□□□□□ -0.23
GCN1-205	ENST00000548821	PARD3	Q8TEW0	1356 aa		13.62	□□□□□ -0.23
GCN1-205	ENST00000548821	USP6	P35125	1406 aa		13.62	□□□□□ -0.23
GCN1-205	ENST00000548821	SSH2	Q76I76	1423 aa		13.62	□□□□□ -0.23
GCN1-205	ENST00000548821	AATK	Q6ZMQ8	1374 aa		13.61	□□□□□ -0.23
GCN1-205	ENST00000548821	ZBTB7C	A1YPR0	619 aa		13.61	□□□□□ -0.23
GCN1-205	ENST00000548821	NBPF14	Q5TI25	921 aa		13.61	□□□□□ -0.23
GCN1-205	ENST00000548821	TERF2IP	Q9NYB0	399 aa		13.61	□□□□□ -0.23
GCN1-205	ENST00000548821	APBA3	O96018	575 aa		13.6	□□□□□ -0.23
GCN1-205	ENST00000548821	TRIM26	Q12899	539 aa	Predicted RBP	13.6	□□□□□ -0.23
GCN1-205	ENST00000548821	LARP1	Q6PKG0	1096 aa	Known RBP	13.6	□□□□□ -0.23
GCN1-205	ENST00000548821	TOM1L2	Q6ZVM7	507 aa		13.6	□□□□□ -0.23
GCN1-205	ENST00000548821	TTC21B	Q7Z4L5	1316 aa		13.6	□□□□□ -0.23
GCN1-205	ENST00000548821	KTN1	Q86UP2	1357 aa	Known RBP	13.59	□□□□□ -0.23
GCN1-205	ENST00000548821	SBNO2	Q9Y2G9	1366 aa		13.59	□□□□□ -0.23
GCN1-205	ENST00000548821	CSB-PGBD3	P0DP91	1061 aa		13.59	□□□□□ -0.23
GCN1-205	ENST00000548821	TOPAZ1	Q8N9V7	1692 aa		13.59	□□□□□ -0.23
GCN1-205	ENST00000548821	NRAP	Q86VF7	1730 aa		13.59	□□□□□ -0.23
GCN1-205	ENST00000548821	CRB1	P82279	1406 aa		13.58	□□□□□ -0.24
GCN1-205	ENST00000548821	EN1	Q05925	392 aa	Predicted RBP	13.58	□□□□□ -0.24
GCN1-205	ENST00000548821	DDB1	Q16531	1140 aa		13.58	□□□□□ -0.24
GCN1-205	ENST00000548821	TMC1	Q8TDI8	760 aa		13.58	□□□□□ -0.24
GCN1-205	ENST00000548821	QRICH2	Q9H0J4	1663 aa		13.57	□□□□□ -0.24
GCN1-205	ENST00000548821	TRIM37	O94972	964 aa		13.57	□□□□□ -0.24
GCN1-205	ENST00000548821	EP400	Q96L91	3159 aa		13.57	□□□□□ -0.24
GCN1-205	ENST00000548821	DISP2	A7MBM2	1401 aa		13.56	□□□□□ -0.24
GCN1-205	ENST00000548821	ARHGEF25	Q86VW2	580 aa		13.56	□□□□□ -0.24
GCN1-205	ENST00000548821	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.56	□□□□□ -0.24
GCN1-205	ENST00000548821	BRWD3	Q6RI45	1802 aa		13.55	□□□□□ -0.24
GCN1-205	ENST00000548821	TRPM1	Q7Z4N2	1603 aa		13.55	□□□□□ -0.24
GCN1-205	ENST00000548821	EXOC5	O00471	708 aa		13.55	□□□□□ -0.24
GCN1-205	ENST00000548821	CDCA8	Q53HL2	280 aa		13.55	□□□□□ -0.24
GCN1-205	ENST00000548821	FAM182B	Q5T319	152 aa		13.55	□□□□□ -0.24
GCN1-205	ENST00000548821	WDR17	Q8IZU2	1322 aa		13.55	□□□□□ -0.24
GCN1-205	ENST00000548821	NINL	Q9Y2I6	1382 aa		13.55	□□□□□ -0.24
GCN1-205	ENST00000548821	CAMTA1	Q9Y6Y1	1673 aa		13.54	□□□□□ -0.24
GCN1-205	ENST00000548821	CRYBG1	Q9Y4K1	1723 aa		13.54	□□□□□ -0.24
GCN1-205	ENST00000548821	CARD10	Q9BWT7	1032 aa		13.54	□□□□□ -0.24
GCN1-205	ENST00000548821	COL5A2	P05997	1499 aa	Predicted RBP	13.54	□□□□□ -0.24
GCN1-205	ENST00000548821	NRK	Q7Z2Y5	1582 aa		13.54	□□□□□ -0.24
GCN1-205	ENST00000548821	RGPD1	P0DJD0	1748 aa		13.53	□□□□□ -0.24
GCN1-205	ENST00000548821	CAMKK2	Q96RR4	588 aa		13.53	□□□□□ -0.24
GCN1-205	ENST00000548821	TIMELESS	Q9UNS1	1208 aa		13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 89 ms