RNA–Protein interactions for RNA: ENST00000546296.5

LTBR-215, Transcript of lymphotoxin beta receptor, humanhuman

TSL 4

Gene LTBR, Length 783 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-215ENST00000546296 TERF2IPQ9NYB0 399 aa23.43■■□□□ 1.34
LTBR-215ENST00000546296 ABTB2Q8N961 1025 aa23.41■■□□□ 1.34
LTBR-215ENST00000546296 CABLES1Q8TDN4 633 aa23.41■■□□□ 1.34
LTBR-215ENST00000546296 KTN1Q86UP2 1357 aaKnown RBP23.4■■□□□ 1.34
LTBR-215ENST00000546296 NUTM2GQ5VZR2 741 aa23.4■■□□□ 1.34
LTBR-215ENST00000546296 USP6P35125 1406 aa23.4■■□□□ 1.34
LTBR-215ENST00000546296 BRD4O60885 1362 aaPredicted RBP23.4■■□□□ 1.34
LTBR-215ENST00000546296 NINLQ9Y2I6 1382 aa23.4■■□□□ 1.34
LTBR-215ENST00000546296 LRP6O75581 1613 aa23.39■■□□□ 1.33
LTBR-215ENST00000546296 TRPM3Q9HCF6 1732 aaPredicted RBP23.38■■□□□ 1.33
LTBR-215ENST00000546296 CPSF1Q10570 1443 aaKnown RBP23.37■■□□□ 1.33
LTBR-215ENST00000546296 C8orf37Q96NL8 207 aa23.37■■□□□ 1.33
LTBR-215ENST00000546296 COL22A1Q8NFW1 1626 aaPredicted RBP23.37■■□□□ 1.33
LTBR-215ENST00000546296 ZEB1P37275 1124 aaPredicted RBP23.36■■□□□ 1.33
LTBR-215ENST00000546296 TTC21BQ7Z4L5 1316 aa23.35■■□□□ 1.33
LTBR-215ENST00000546296 NGLY1Q96IV0 654 aa23.35■■□□□ 1.33
LTBR-215ENST00000546296 NLRP13Q86W25 1043 aa23.34■■□□□ 1.33
LTBR-215ENST00000546296 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.34■■□□□ 1.33
LTBR-215ENST00000546296 A0A1W2PP64 1363 aa23.33■■□□□ 1.33
LTBR-215ENST00000546296 NLRP6P59044 892 aa23.33■■□□□ 1.33
LTBR-215ENST00000546296 TTC21AQ8NDW8 1320 aa23.33■■□□□ 1.32
LTBR-215ENST00000546296 CD163L1Q9NR16 1453 aa23.32■■□□□ 1.32
LTBR-215ENST00000546296 SSH2Q76I76 1423 aa23.32■■□□□ 1.32
LTBR-215ENST00000546296 ALS2Q96Q42 1657 aa23.32■■□□□ 1.32
LTBR-215ENST00000546296 C11orf95C9JLR9 678 aaPredicted RBP23.31■■□□□ 1.32
LTBR-215ENST00000546296 ANKRD36BQ8N2N9 1353 aa23.3■■□□□ 1.32
LTBR-215ENST00000546296 AFF2P51816 1311 aa23.29■■□□□ 1.32
LTBR-215ENST00000546296 EDC4Q6P2E9 1401 aaKnown RBP23.28■■□□□ 1.32
LTBR-215ENST00000546296 AKAP12Q02952 1782 aa23.28■■□□□ 1.32
LTBR-215ENST00000546296 ZNF772Q68DY9 489 aaPredicted RBP23.27■■□□□ 1.32
LTBR-215ENST00000546296 RGS17Q9UGC6 210 aaPredicted RBP23.27■■□□□ 1.32
LTBR-215ENST00000546296 NME9Q86XW9 330 aa23.26■■□□□ 1.31
LTBR-215ENST00000546296 ZC3H6P61129 1189 aaKnown RBP23.25■■□□□ 1.31
LTBR-215ENST00000546296 GCP02774 474 aa23.24■■□□□ 1.31
LTBR-215ENST00000546296 ZRANB1Q9UGI0 708 aa23.24■■□□□ 1.31
LTBR-215ENST00000546296 USP21Q9UK80 565 aa23.24■■□□□ 1.31
LTBR-215ENST00000546296 USP19O94966 1318 aa23.24■■□□□ 1.31
LTBR-215ENST00000546296 KIF7Q2M1P5 1343 aa23.24■■□□□ 1.31
LTBR-215ENST00000546296 MON2Q7Z3U7 1717 aa23.23■■□□□ 1.31
LTBR-215ENST00000546296 FAM83GA6ND36 823 aa23.23■■□□□ 1.31
LTBR-215ENST00000546296 PRDM11Q9NQV5 511 aa23.23■■□□□ 1.31
LTBR-215ENST00000546296 FNBP4Q8N3X1 1017 aaPredicted RBP23.22■■□□□ 1.31
LTBR-215ENST00000546296 SOX12O15370 315 aa23.21■■□□□ 1.31
LTBR-215ENST00000546296 KCNH5Q8NCM2 988 aa23.21■■□□□ 1.31
LTBR-215ENST00000546296 CARD14Q9BXL6 1004 aa23.21■■□□□ 1.31
LTBR-215ENST00000546296 NRKQ7Z2Y5 1582 aa23.2■■□□□ 1.3
LTBR-215ENST00000546296 ZBTB7CA1YPR0 619 aa23.2■■□□□ 1.3
LTBR-215ENST00000546296 POTEAQ6S8J7 498 aa23.2■■□□□ 1.3
LTBR-215ENST00000546296 PANK3Q9H999 370 aa23.2■■□□□ 1.3
LTBR-215ENST00000546296 PIK3C2AO00443 1686 aa23.19■■□□□ 1.3
LTBR-215ENST00000546296 KIAA0232Q92628 1395 aa23.19■■□□□ 1.3
LTBR-215ENST00000546296 QTRT2Q9H974 415 aaKnown RBP23.19■■□□□ 1.3
LTBR-215ENST00000546296 USP31Q70CQ4 1352 aa23.18■■□□□ 1.3
LTBR-215ENST00000546296 CHRNA2Q15822 529 aa23.18■■□□□ 1.3
LTBR-215ENST00000546296 COG3Q96JB2 828 aa23.18■■□□□ 1.3
LTBR-215ENST00000546296 ABCA3Q99758 1704 aa23.18■■□□□ 1.3
LTBR-215ENST00000546296 NSD3Q9BZ95 1437 aa23.17■■□□□ 1.3
LTBR-215ENST00000546296 CCDC7Q96M83 1385 aa23.16■■□□□ 1.3
LTBR-215ENST00000546296 MYOM1P52179 1685 aa23.16■■□□□ 1.3
LTBR-215ENST00000546296 FYB1O15117 783 aa23.16■■□□□ 1.3
LTBR-215ENST00000546296 UNC5CLQ8IV45 518 aa23.16■■□□□ 1.3
LTBR-215ENST00000546296 BTG4Q9NY30 223 aa23.16■■□□□ 1.3
LTBR-215ENST00000546296 TRPC5Q9UL62 973 aaPredicted RBP23.16■■□□□ 1.3
LTBR-215ENST00000546296 PHRF1Q9P1Y6 1649 aaKnown RBP23.15■■□□□ 1.3
LTBR-215ENST00000546296 GGNBP2Q9H3C7 697 aa23.15■■□□□ 1.3
LTBR-215ENST00000546296 MARF1Q9Y4F3 1742 aaKnown RBP23.15■■□□□ 1.3
LTBR-215ENST00000546296 WASHC2AQ641Q2 1341 aa23.14■■□□□ 1.3
LTBR-215ENST00000546296 CRYBG1Q9Y4K1 1723 aa23.14■■□□□ 1.3
LTBR-215ENST00000546296 CPDO75976 1380 aa23.14■■□□□ 1.29
LTBR-215ENST00000546296 SLIT3O75094 1523 aa23.13■■□□□ 1.29
LTBR-215ENST00000546296 RXRBP28702 533 aa23.13■■□□□ 1.29
LTBR-215ENST00000546296 SLIT2O94813 1529 aa23.13■■□□□ 1.29
LTBR-215ENST00000546296 CGNL1Q0VF96 1302 aa23.12■■□□□ 1.29
LTBR-215ENST00000546296 BCL9LQ86UU0 1499 aa23.12■■□□□ 1.29
LTBR-215ENST00000546296 EVA1CP58658 441 aa23.11■■□□□ 1.29
LTBR-215ENST00000546296 CCDC9Q9Y3X0 531 aaKnown RBP23.11■■□□□ 1.29
LTBR-215ENST00000546296 ILDR2Q71H61 639 aa23.1■■□□□ 1.29
LTBR-215ENST00000546296 ARHGEF25Q86VW2 580 aa23.1■■□□□ 1.29
LTBR-215ENST00000546296 KNSTRNQ9Y448 316 aa23.1■■□□□ 1.29
LTBR-215ENST00000546296 COL14A1Q05707 1796 aaKnown RBP23.09■■□□□ 1.29
LTBR-215ENST00000546296 OVOS2A0A0J9YW53 1432 aa23.09■■□□□ 1.29
LTBR-215ENST00000546296 OVOS2Q6IE36 1432 aa23.09■■□□□ 1.29
LTBR-215ENST00000546296 RBM6P78332 1123 aaKnown RBP23.09■■□□□ 1.29
LTBR-215ENST00000546296 STRN4Q9NRL3 753 aa23.09■■□□□ 1.29
LTBR-215ENST00000546296 VPS72Q15906 364 aa23.07■■□□□ 1.28
LTBR-215ENST00000546296 ATRNO75882 1429 aa23.07■■□□□ 1.28
LTBR-215ENST00000546296 AATKQ6ZMQ8 1374 aa23.06■■□□□ 1.28
LTBR-215ENST00000546296 GJD4Q96KN9 370 aaPredicted RBP23.06■■□□□ 1.28
LTBR-215ENST00000546296 PLCH1Q4KWH8 1693 aa23.05■■□□□ 1.28
LTBR-215ENST00000546296 NFAT5O94916 1531 aa23.04■■□□□ 1.28
LTBR-215ENST00000546296 FBLN1P23142 703 aa23.03■■□□□ 1.28
LTBR-215ENST00000546296 USP54Q70EL1 1684 aa23.03■■□□□ 1.28
LTBR-215ENST00000546296 NWD2Q9ULI1 1742 aa23.02■■□□□ 1.28
LTBR-215ENST00000546296 AXIN2Q9Y2T1 843 aa23.02■■□□□ 1.28
LTBR-215ENST00000546296 CAMTA1Q9Y6Y1 1673 aa23.01■■□□□ 1.27
LTBR-215ENST00000546296 AMPHP49418 695 aa23.01■■□□□ 1.27
LTBR-215ENST00000546296 CSB-PGBD3P0DP91 1061 aa23■■□□□ 1.27
LTBR-215ENST00000546296 LARP1Q6PKG0 1096 aaKnown RBP23■■□□□ 1.27
LTBR-215ENST00000546296 KIF20BQ96Q89 1820 aa22.99■■□□□ 1.27
LTBR-215ENST00000546296 TNNT2P45379 298 aaPredicted RBP22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms