RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 FBXO31Q5XUX0 539 aaPredicted RBP6.73□□□□□ -1.33
USP28-210ENST00000542033 WNT7AO00755 349 aa6.72□□□□□ -1.33
USP28-210ENST00000542033 NRG2O14511 850 aaPredicted RBP6.72□□□□□ -1.33
USP28-210ENST00000542033 GFRA3O60609 400 aa6.72□□□□□ -1.33
USP28-210ENST00000542033 BANK1Q8NDB2 785 aa6.72□□□□□ -1.33
USP28-210ENST00000542033 LRRN4Q8WUT4 740 aa6.72□□□□□ -1.33
USP28-210ENST00000542033 GTF3C3Q9Y5Q9 886 aa6.72□□□□□ -1.33
USP28-210ENST00000542033 GDF9O60383 454 aa6.71□□□□□ -1.34
USP28-210ENST00000542033 ZNF511Q8NB15 262 aa6.71□□□□□ -1.34
USP28-210ENST00000542033 BAP1Q92560 729 aa6.71□□□□□ -1.34
USP28-210ENST00000542033 GPKOWQ92917 476 aaPredicted RBP eCLIP6.71□□□□□ -1.34
USP28-210ENST00000542033 TNFRSF10AO00220 468 aa6.7□□□□□ -1.34
USP28-210ENST00000542033 SH3BP2P78314 561 aa6.7□□□□□ -1.34
USP28-210ENST00000542033 SKOR1P84550 965 aa6.7□□□□□ -1.34
USP28-210ENST00000542033 LINC01559Q495D7 138 aa6.7□□□□□ -1.34
USP28-210ENST00000542033 RC3H1Q5TC82 1133 aaKnown RBP6.7□□□□□ -1.34
USP28-210ENST00000542033 CYP4X1Q8N118 509 aa6.7□□□□□ -1.34
USP28-210ENST00000542033 EHBP1Q8NDI1 1231 aa6.7□□□□□ -1.34
USP28-210ENST00000542033 PKD2L1Q9P0L9 805 aa6.7□□□□□ -1.34
USP28-210ENST00000542033 ZC3H4Q9UPT8 1303 aaKnown RBP6.7□□□□□ -1.34
USP28-210ENST00000542033 SOCS7O14512 581 aa6.69□□□□□ -1.34
USP28-210ENST00000542033 AGERQ15109 404 aa6.69□□□□□ -1.34
USP28-210ENST00000542033 NR6A1Q15406 480 aa6.69□□□□□ -1.34
USP28-210ENST00000542033 TRAF7Q6Q0C0 670 aa6.69□□□□□ -1.34
USP28-210ENST00000542033 BPHLQ86WA6 291 aaPredicted RBP6.69□□□□□ -1.34
USP28-210ENST00000542033 TTC24A2A3L6 582 aaPredicted RBP6.68□□□□□ -1.34
USP28-210ENST00000542033 VARSP26640 1264 aaKnown RBP6.68□□□□□ -1.34
USP28-210ENST00000542033 TRIM67Q6ZTA4 783 aa6.68□□□□□ -1.34
USP28-210ENST00000542033 SNIP1Q8TAD8 396 aaKnown RBP6.68□□□□□ -1.34
USP28-210ENST00000542033 MRGPRX2Q96LB1 330 aa6.68□□□□□ -1.34
USP28-210ENST00000542033 FKBPLQ9UIM3 349 aa6.68□□□□□ -1.34
USP28-210ENST00000542033 FLIIQ13045 1269 aa6.67□□□□□ -1.34
USP28-210ENST00000542033 PRM3Q9NNZ6 103 aa6.67□□□□□ -1.34
USP28-210ENST00000542033 HMX1Q9NP08 348 aaPredicted RBP6.67□□□□□ -1.34
USP28-210ENST00000542033 DGAT1O75907 488 aa6.66□□□□□ -1.34
USP28-210ENST00000542033 PKDCCQ504Y2 493 aa6.66□□□□□ -1.34
USP28-210ENST00000542033 PDXDC2PQ6P474 469 aa6.66□□□□□ -1.34
USP28-210ENST00000542033 FAM174AQ8TBP5 190 aa6.66□□□□□ -1.34
USP28-210ENST00000542033 TOR4AQ9NXH8 423 aa6.66□□□□□ -1.34
USP28-210ENST00000542033 FAM187AA6NFU0 413 aa6.65□□□□□ -1.34
USP28-210ENST00000542033 LCE2BO14633 110 aa6.65□□□□□ -1.34
USP28-210ENST00000542033 GPSM3Q9Y4H4 160 aa6.65□□□□□ -1.34
USP28-210ENST00000542033 PTK2Q05397 1052 aa6.64□□□□□ -1.35
USP28-210ENST00000542033 SH3BP5LQ7L8J4 393 aa6.64□□□□□ -1.35
USP28-210ENST00000542033 FOXJ1Q92949 421 aa6.64□□□□□ -1.35
USP28-210ENST00000542033 ARHGAP9Q9BRR9 750 aa6.64□□□□□ -1.35
USP28-210ENST00000542033 SNRKQ9NRH2 765 aa6.64□□□□□ -1.35
USP28-210ENST00000542033 NDUFB9Q9Y6M9 179 aa6.64□□□□□ -1.35
USP28-210ENST00000542033 MAGEB6P1A0A0J9YX57 407 aa6.63□□□□□ -1.35
USP28-210ENST00000542033 ALDH1A1P00352 501 aa6.63□□□□□ -1.35
USP28-210ENST00000542033 MCM6Q14566 821 aa6.63□□□□□ -1.35
USP28-210ENST00000542033 SH3RF1Q7Z6J0 888 aa6.63□□□□□ -1.35
USP28-210ENST00000542033 ZBTB33Q86T24 672 aa6.63□□□□□ -1.35
USP28-210ENST00000542033 MPNDQ8N594 471 aa6.63□□□□□ -1.35
USP28-210ENST00000542033 MTMR14Q8NCE2 650 aa6.63□□□□□ -1.35
USP28-210ENST00000542033 EPS8L1Q8TE68 723 aa6.63□□□□□ -1.35
USP28-210ENST00000542033 TRIM34Q9BYJ4 488 aa6.63□□□□□ -1.35
USP28-210ENST00000542033 WASF2Q9Y6W5 498 aa6.63□□□□□ -1.35
USP28-210ENST00000542033 SIAH2O43255 324 aa6.62□□□□□ -1.35
USP28-210ENST00000542033 GJD4Q96KN9 370 aaPredicted RBP6.62□□□□□ -1.35
USP28-210ENST00000542033 C1QTNF2Q9BXJ5 285 aa6.61□□□□□ -1.35
USP28-210ENST00000542033 CARD14Q9BXL6 1004 aa6.61□□□□□ -1.35
USP28-210ENST00000542033 CDV3Q9UKY7 258 aaKnown RBP6.61□□□□□ -1.35
USP28-210ENST00000542033 UBTFP17480 764 aaKnown RBP6.6□□□□□ -1.35
USP28-210ENST00000542033 C4orf48Q5BLP8 95 aa6.6□□□□□ -1.35
USP28-210ENST00000542033 TRMT44Q8IYL2 757 aaKnown RBP6.6□□□□□ -1.35
USP28-210ENST00000542033 ZNF592Q92610 1267 aa6.6□□□□□ -1.35
USP28-210ENST00000542033 SLC10A4Q96EP9 437 aa6.6□□□□□ -1.35
USP28-210ENST00000542033 ZNF330Q9Y3S2 320 aaPredicted RBP6.6□□□□□ -1.35
USP28-210ENST00000542033 TLL2Q9Y6L7 1015 aa6.6□□□□□ -1.35
USP28-210ENST00000542033 J3QL48 77 aa6.59□□□□□ -1.35
USP28-210ENST00000542033 RAD21O60216 631 aa6.59□□□□□ -1.35
USP28-210ENST00000542033 SMPD1P17405 629 aa6.59□□□□□ -1.35
USP28-210ENST00000542033 ARID5BQ14865 1188 aa6.59□□□□□ -1.35
USP28-210ENST00000542033 CTC1Q2NKJ3 1217 aa6.59□□□□□ -1.35
USP28-210ENST00000542033 CDK15Q96Q40 435 aa6.59□□□□□ -1.35
USP28-210ENST00000542033 MAP4K5Q9Y4K4 846 aa6.59□□□□□ -1.35
USP28-210ENST00000542033 ZBBXA8MT70 800 aa6.58□□□□□ -1.36
USP28-210ENST00000542033 ADH1CP00326 375 aa6.58□□□□□ -1.36
USP28-210ENST00000542033 AVPP01185 164 aa6.58□□□□□ -1.36
USP28-210ENST00000542033 NR5A1Q13285 461 aa6.58□□□□□ -1.36
USP28-210ENST00000542033 ERFEQ4G0M1 354 aa6.58□□□□□ -1.36
USP28-210ENST00000542033 ERICH6Q7L0X2 663 aa6.58□□□□□ -1.36
USP28-210ENST00000542033 VASH1Q7L8A9 365 aaPredicted RBP6.58□□□□□ -1.36
USP28-210ENST00000542033 NBPF20Q3BBV1 942 aa6.57□□□□□ -1.36
USP28-210ENST00000542033 ZNF787Q6DD87 383 aa6.57□□□□□ -1.36
USP28-210ENST00000542033 C14orf37Q86TY3 774 aa6.57□□□□□ -1.36
USP28-210ENST00000542033 ADAM32Q8TC27 787 aa6.57□□□□□ -1.36
USP28-210ENST00000542033 SMCPP49901 116 aaPredicted RBP6.56□□□□□ -1.36
USP28-210ENST00000542033 MCCD1P59942 119 aaPredicted RBP6.56□□□□□ -1.36
USP28-210ENST00000542033 MYT1Q01538 1121 aa6.56□□□□□ -1.36
USP28-210ENST00000542033 NNTQ13423 1086 aa6.56□□□□□ -1.36
USP28-210ENST00000542033 DZIP3Q86Y13 1208 aaKnown RBP6.56□□□□□ -1.36
USP28-210ENST00000542033 WWC1Q8IX03 1113 aa6.56□□□□□ -1.36
USP28-210ENST00000542033 CRIPAKQ8N1N5 446 aa6.56□□□□□ -1.36
USP28-210ENST00000542033 AXIN1O15169 862 aa6.55□□□□□ -1.36
USP28-210ENST00000542033 FBXO45P0C2W1 286 aa6.55□□□□□ -1.36
USP28-210ENST00000542033 NR1H3Q13133 447 aa6.55□□□□□ -1.36
USP28-210ENST00000542033 TRIM52Q96A61 297 aa6.55□□□□□ -1.36
USP28-210ENST00000542033 GDPD2Q9HCC8 539 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms