RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 DNMT3AQ9Y6K1 912 aaPredicted RBP9.7□□□□□ -0.86
PRKDC-210ENST00000541488 TLL2Q9Y6L7 1015 aa9.7□□□□□ -0.86
PRKDC-210ENST00000541488 PPFIA3O75145 1194 aa9.69□□□□□ -0.86
PRKDC-210ENST00000541488 KRT76Q01546 638 aa9.69□□□□□ -0.86
PRKDC-210ENST00000541488 NUTM1Q86Y26 1132 aa9.69□□□□□ -0.86
PRKDC-210ENST00000541488 PARP9Q8IXQ6 854 aa9.69□□□□□ -0.86
PRKDC-210ENST00000541488 IGHA1P01876 353 aa9.68□□□□□ -0.86
PRKDC-210ENST00000541488 JUNDP17535 347 aa9.68□□□□□ -0.86
PRKDC-210ENST00000541488 HOXA2O43364 376 aa9.67□□□□□ -0.86
PRKDC-210ENST00000541488 TIMP2P16035 220 aa9.67□□□□□ -0.86
PRKDC-210ENST00000541488 SH3BP2P78314 561 aa9.67□□□□□ -0.86
PRKDC-210ENST00000541488 NNTQ13423 1086 aa9.67□□□□□ -0.86
PRKDC-210ENST00000541488 KRTAP4-8Q9BYQ9 185 aa9.67□□□□□ -0.86
PRKDC-210ENST00000541488 SYMPKQ92797 1274 aaKnown RBP9.66□□□□□ -0.86
PRKDC-210ENST00000541488 MAN1A2O60476 641 aa9.65□□□□□ -0.86
PRKDC-210ENST00000541488 MS4A1P11836 297 aa9.65□□□□□ -0.86
PRKDC-210ENST00000541488 IRS1P35568 1242 aa9.65□□□□□ -0.86
PRKDC-210ENST00000541488 PDE4DQ08499 809 aa9.65□□□□□ -0.86
PRKDC-210ENST00000541488 NUDT12Q9BQG2 462 aa9.65□□□□□ -0.86
PRKDC-210ENST00000541488 BEGAINQ9BUH8 593 aa9.65□□□□□ -0.86
PRKDC-210ENST00000541488 WDR4P57081 412 aaKnown RBP9.64□□□□□ -0.87
PRKDC-210ENST00000541488 CNTNAP3BQ96NU0 1288 aa9.64□□□□□ -0.87
PRKDC-210ENST00000541488 CNTNAP3Q9BZ76 1288 aa9.64□□□□□ -0.87
PRKDC-210ENST00000541488 ADH1CP00326 375 aa9.63□□□□□ -0.87
PRKDC-210ENST00000541488 NDUFV2P19404 249 aa9.63□□□□□ -0.87
PRKDC-210ENST00000541488 USP46P62068 366 aa9.63□□□□□ -0.87
PRKDC-210ENST00000541488 SPIRE2Q8WWL2 714 aa9.63□□□□□ -0.87
PRKDC-210ENST00000541488 GPR161Q8N6U8 529 aaKnown RBP9.62□□□□□ -0.87
PRKDC-210ENST00000541488 MOXD2PA6NHM9 499 aa9.61□□□□□ -0.87
PRKDC-210ENST00000541488 ZNF385CQ66K41 422 aaPredicted RBP9.61□□□□□ -0.87
PRKDC-210ENST00000541488 FDX1P10109 184 aa9.6□□□□□ -0.87
PRKDC-210ENST00000541488 FOXK2Q01167 660 aa9.6□□□□□ -0.87
PRKDC-210ENST00000541488 PLEKHG3A1L390 1219 aa9.59□□□□□ -0.87
PRKDC-210ENST00000541488 C6orf118Q5T5N4 469 aa9.59□□□□□ -0.87
PRKDC-210ENST00000541488 SVOPQ8N4V2 548 aa9.59□□□□□ -0.87
PRKDC-210ENST00000541488 KLF16Q9BXK1 252 aaPredicted RBP9.59□□□□□ -0.87
PRKDC-210ENST00000541488 PCDHGC3Q9UN70 934 aa9.59□□□□□ -0.87
PRKDC-210ENST00000541488 C6orf229H3BNL8 230 aa9.58□□□□□ -0.88
PRKDC-210ENST00000541488 LINC01559Q495D7 138 aa9.58□□□□□ -0.88
PRKDC-210ENST00000541488 TBC1D2Q9BYX2 928 aa9.58□□□□□ -0.88
PRKDC-210ENST00000541488 MPNDQ8N594 471 aa9.56□□□□□ -0.88
PRKDC-210ENST00000541488 GPBP1L1Q9HC44 474 aaPredicted RBP9.56□□□□□ -0.88
PRKDC-210ENST00000541488 ADAM23O75077 832 aa9.55□□□□□ -0.88
PRKDC-210ENST00000541488 CSPP1Q1MSJ5 1256 aa9.55□□□□□ -0.88
PRKDC-210ENST00000541488 KANK3Q6NY19 840 aa9.55□□□□□ -0.88
PRKDC-210ENST00000541488 WHAMMQ8TF30 809 aa9.55□□□□□ -0.88
PRKDC-210ENST00000541488 COL25A1Q9BXS0 654 aaPredicted RBP9.55□□□□□ -0.88
PRKDC-210ENST00000541488 ZFAND3Q9H8U3 227 aa9.55□□□□□ -0.88
PRKDC-210ENST00000541488 VARSP26640 1264 aaKnown RBP9.54□□□□□ -0.88
PRKDC-210ENST00000541488 BAP1Q92560 729 aa9.54□□□□□ -0.88
PRKDC-210ENST00000541488 UNC93B1Q9H1C4 597 aa9.54□□□□□ -0.88
PRKDC-210ENST00000541488 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.53□□□□□ -0.88
PRKDC-210ENST00000541488 ARHGEF15O94989 841 aa9.53□□□□□ -0.88
PRKDC-210ENST00000541488 CCNYL3P0C7X3 344 aa9.53□□□□□ -0.88
PRKDC-210ENST00000541488 DNMT3LQ9UJW3 386 aa9.53□□□□□ -0.88
PRKDC-210ENST00000541488 ZIC2O95409 532 aaPredicted RBP9.52□□□□□ -0.89
PRKDC-210ENST00000541488 RNFT1Q5M7Z0 435 aa9.52□□□□□ -0.89
PRKDC-210ENST00000541488 RETREG3Q86VR2 466 aa9.52□□□□□ -0.89
PRKDC-210ENST00000541488 PCDHB15Q9Y5E8 787 aa9.52□□□□□ -0.89
PRKDC-210ENST00000541488 MARSP56192 900 aaKnown RBP9.51□□□□□ -0.89
PRKDC-210ENST00000541488 ZNF511Q8NB15 262 aa9.51□□□□□ -0.89
PRKDC-210ENST00000541488 ITPKCQ96DU7 683 aa9.51□□□□□ -0.89
PRKDC-210ENST00000541488 KRTAP9-2Q9BYQ4 174 aa9.51□□□□□ -0.89
PRKDC-210ENST00000541488 BMP2P12643 396 aa9.5□□□□□ -0.89
PRKDC-210ENST00000541488 RSBN1LQ6PCB5 846 aaPredicted RBP9.5□□□□□ -0.89
PRKDC-210ENST00000541488 SOS2Q07890 1332 aaPredicted RBP9.5□□□□□ -0.89
PRKDC-210ENST00000541488 MTMR2Q13614 643 aa9.49□□□□□ -0.89
PRKDC-210ENST00000541488 RIC3Q7Z5B4 369 aa9.49□□□□□ -0.89
PRKDC-210ENST00000541488 MYSM1Q5VVJ2 828 aa9.48□□□□□ -0.89
PRKDC-210ENST00000541488 LINC00528Q8N1L1 170 aa9.48□□□□□ -0.89
PRKDC-210ENST00000541488 PRR7Q8TB68 274 aa9.48□□□□□ -0.89
PRKDC-210ENST00000541488 CABLES1Q8TDN4 633 aa9.48□□□□□ -0.89
PRKDC-210ENST00000541488 PSMG3-AS1Q96PY0 264 aa9.48□□□□□ -0.89
PRKDC-210ENST00000541488 KDM4CQ9H3R0 1056 aa9.48□□□□□ -0.89
PRKDC-210ENST00000541488 LIMD1Q9UGP4 676 aa9.48□□□□□ -0.89
PRKDC-210ENST00000541488 KRTAP9-6A0A140TA67 174 aa9.47□□□□□ -0.89
PRKDC-210ENST00000541488 MSTNO14793 375 aa9.47□□□□□ -0.89
PRKDC-210ENST00000541488 SLURP2P0DP57 97 aa9.47□□□□□ -0.89
PRKDC-210ENST00000541488 DIXDC1Q155Q3 683 aa9.47□□□□□ -0.89
PRKDC-210ENST00000541488 TPRNQ4KMQ1 711 aa9.47□□□□□ -0.89
PRKDC-210ENST00000541488 SCARF2Q96GP6 870 aaPredicted RBP9.47□□□□□ -0.89
PRKDC-210ENST00000541488 POLR3EQ9NVU0 708 aa9.47□□□□□ -0.89
PRKDC-210ENST00000541488 UPP2O95045 317 aa9.46□□□□□ -0.9
PRKDC-210ENST00000541488 TSC1Q92574 1164 aa9.46□□□□□ -0.9
PRKDC-210ENST00000541488 EVA1BQ9NVM1 165 aa9.46□□□□□ -0.9
PRKDC-210ENST00000541488 ATP1B4Q9UN42 357 aaPredicted RBP9.46□□□□□ -0.9
PRKDC-210ENST00000541488 SPTLC1O15269 473 aa9.45□□□□□ -0.9
PRKDC-210ENST00000541488 NR3C2P08235 984 aa9.45□□□□□ -0.9
PRKDC-210ENST00000541488 HRCP23327 699 aa9.45□□□□□ -0.9
PRKDC-210ENST00000541488 PTPRNQ16849 979 aa9.45□□□□□ -0.9
PRKDC-210ENST00000541488 MEIOBQ8N635 442 aa9.45□□□□□ -0.9
PRKDC-210ENST00000541488 NANOS1Q8WY41 292 aaKnown RBP9.45□□□□□ -0.9
PRKDC-210ENST00000541488 FAM117AQ9C073 453 aa9.45□□□□□ -0.9
PRKDC-210ENST00000541488 PTSQ03393 145 aa9.44□□□□□ -0.9
PRKDC-210ENST00000541488 KCNH2Q12809 1159 aa9.44□□□□□ -0.9
PRKDC-210ENST00000541488 QPCTQ16769 361 aa9.44□□□□□ -0.9
PRKDC-210ENST00000541488 PLA2G4EQ3MJ16 856 aa9.44□□□□□ -0.9
PRKDC-210ENST00000541488 FAM174AQ8TBP5 190 aa9.44□□□□□ -0.9
PRKDC-210ENST00000541488 SPOCK3Q9BQ16 436 aa9.44□□□□□ -0.9
PRKDC-210ENST00000541488 NUTM2BA6NNL0 878 aaPredicted RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms