RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 RGL3Q3MIN7 710 aa18.57■□□□□ 0.56
CLSTN3-208ENST00000538933 SLC4A1APQ9BWU0 796 aaKnown RBP18.57■□□□□ 0.56
CLSTN3-208ENST00000538933 FAM196AQ6ZSG2 479 aa18.56■□□□□ 0.56
CLSTN3-208ENST00000538933 PMFBP1Q8TBY8 1022 aa18.56■□□□□ 0.56
CLSTN3-208ENST00000538933 APBA3O96018 575 aa18.55■□□□□ 0.56
CLSTN3-208ENST00000538933 SPATA31A1Q5TZJ5 1347 aa18.54■□□□□ 0.56
CLSTN3-208ENST00000538933 ANKARQ7Z5J8 1434 aa18.53■□□□□ 0.56
CLSTN3-208ENST00000538933 C14orf93Q9H972 538 aaKnown RBP18.53■□□□□ 0.56
CLSTN3-208ENST00000538933 CAMTA1Q9Y6Y1 1673 aa18.52■□□□□ 0.56
CLSTN3-208ENST00000538933 PRAM1Q96QH2 718 aa18.5■□□□□ 0.55
CLSTN3-208ENST00000538933 SPON1Q9HCB6 807 aa18.5■□□□□ 0.55
CLSTN3-208ENST00000538933 NINLQ9Y2I6 1382 aa18.5■□□□□ 0.55
CLSTN3-208ENST00000538933 KCNQ2O43526 872 aa18.49■□□□□ 0.55
CLSTN3-208ENST00000538933 SAFB2Q14151 953 aaKnown RBP eCLIP18.49■□□□□ 0.55
CLSTN3-208ENST00000538933 ACIN1Q9UKV3 1341 aaKnown RBP18.49■□□□□ 0.55
CLSTN3-208ENST00000538933 NBPF8Q3BBV2 869 aa18.48■□□□□ 0.55
CLSTN3-208ENST00000538933 NBPF14Q5TI25 921 aa18.48■□□□□ 0.55
CLSTN3-208ENST00000538933 PRR36Q9H6K5 1346 aa18.48■□□□□ 0.55
CLSTN3-208ENST00000538933 DHX57Q6P158 1386 aaKnown RBP18.47■□□□□ 0.55
CLSTN3-208ENST00000538933 CFAP70Q5T0N1 1121 aa18.47■□□□□ 0.55
CLSTN3-208ENST00000538933 PRDM11Q9NQV5 511 aa18.47■□□□□ 0.55
CLSTN3-208ENST00000538933 GPRASP1Q5JY77 1395 aa18.46■□□□□ 0.55
CLSTN3-208ENST00000538933 DLC1Q96QB1 1528 aa18.46■□□□□ 0.55
CLSTN3-208ENST00000538933 CEP350Q5VT06 3117 aa18.45■□□□□ 0.54
CLSTN3-208ENST00000538933 KIAA0232Q92628 1395 aa18.45■□□□□ 0.54
CLSTN3-208ENST00000538933 BARGINQ6ZT62 677 aa18.45■□□□□ 0.54
CLSTN3-208ENST00000538933 PCGF6Q9BYE7 350 aa18.45■□□□□ 0.54
CLSTN3-208ENST00000538933 PPP1R1BQ9UD71 204 aaPredicted RBP18.45■□□□□ 0.54
CLSTN3-208ENST00000538933 CHRNA2Q15822 529 aa18.44■□□□□ 0.54
CLSTN3-208ENST00000538933 PHRF1Q9P1Y6 1649 aaKnown RBP18.43■□□□□ 0.54
CLSTN3-208ENST00000538933 DCAF8L1A6NGE4 600 aa18.43■□□□□ 0.54
CLSTN3-208ENST00000538933 ZNF784Q8NCA9 323 aaPredicted RBP18.43■□□□□ 0.54
CLSTN3-208ENST00000538933 CASZ1Q86V15 1759 aa18.42■□□□□ 0.54
CLSTN3-208ENST00000538933 STRN4Q9NRL3 753 aa18.42■□□□□ 0.54
CLSTN3-208ENST00000538933 PDE3BQ13370 1112 aa18.41■□□□□ 0.54
CLSTN3-208ENST00000538933 POGKQ9P215 609 aa18.41■□□□□ 0.54
CLSTN3-208ENST00000538933 TULP4Q9NRJ4 1543 aa18.4■□□□□ 0.54
CLSTN3-208ENST00000538933 HIRIP3Q9BW71 556 aaPredicted RBP18.4■□□□□ 0.54
CLSTN3-208ENST00000538933 SBF2Q86WG5 1849 aa18.39■□□□□ 0.54
CLSTN3-208ENST00000538933 USP35Q9P2H5 1018 aa18.39■□□□□ 0.53
CLSTN3-208ENST00000538933 RGPD3A6NKT7 1758 aaPredicted RBP18.39■□□□□ 0.53
CLSTN3-208ENST00000538933 RGPD4Q7Z3J3 1758 aa18.39■□□□□ 0.53
CLSTN3-208ENST00000538933 SSH2Q76I76 1423 aa18.39■□□□□ 0.53
CLSTN3-208ENST00000538933 ADGRB1O14514 1584 aa18.38■□□□□ 0.53
CLSTN3-208ENST00000538933 PEAK1Q9H792 1746 aa18.38■□□□□ 0.53
CLSTN3-208ENST00000538933 PAK3O75914 559 aaPredicted RBP18.38■□□□□ 0.53
CLSTN3-208ENST00000538933 ZC3H6P61129 1189 aaKnown RBP18.38■□□□□ 0.53
CLSTN3-208ENST00000538933 CHD4Q14839 1912 aa18.38■□□□□ 0.53
CLSTN3-208ENST00000538933 LARP1Q6PKG0 1096 aaKnown RBP18.37■□□□□ 0.53
CLSTN3-208ENST00000538933 NGDNQ8NEJ9 315 aaKnown RBP18.37■□□□□ 0.53
CLSTN3-208ENST00000538933 MPHOSPH9Q99550 1183 aa18.37■□□□□ 0.53
CLSTN3-208ENST00000538933 PDGFDQ9GZP0 370 aaPredicted RBP18.37■□□□□ 0.53
CLSTN3-208ENST00000538933 NRKQ7Z2Y5 1582 aa18.37■□□□□ 0.53
CLSTN3-208ENST00000538933 PARP4Q9UKK3 1724 aaKnown RBP18.37■□□□□ 0.53
CLSTN3-208ENST00000538933 WASLO00401 505 aaPredicted RBP18.36■□□□□ 0.53
CLSTN3-208ENST00000538933 MINK1Q8N4C8 1332 aaPredicted RBP18.36■□□□□ 0.53
CLSTN3-208ENST00000538933 LMO7Q8WWI1 1683 aa18.36■□□□□ 0.53
CLSTN3-208ENST00000538933 MYOM1P52179 1685 aa18.35■□□□□ 0.53
CLSTN3-208ENST00000538933 EIF3AQ14152 1382 aaKnown RBP18.35■□□□□ 0.53
CLSTN3-208ENST00000538933 PTGER2P43116 358 aa18.35■□□□□ 0.53
CLSTN3-208ENST00000538933 IFFO2Q5TF58 517 aa18.35■□□□□ 0.53
CLSTN3-208ENST00000538933 TCP11L2Q8N4U5 519 aa18.35■□□□□ 0.53
CLSTN3-208ENST00000538933 ANO8Q9HCE9 1232 aaPredicted RBP18.35■□□□□ 0.53
CLSTN3-208ENST00000538933 PLSCR1O15162 318 aa18.34■□□□□ 0.53
CLSTN3-208ENST00000538933 EVA1CP58658 441 aa18.34■□□□□ 0.53
CLSTN3-208ENST00000538933 TRAK1Q9UPV9 953 aa18.33■□□□□ 0.52
CLSTN3-208ENST00000538933 ITSN1Q15811 1721 aa18.32■□□□□ 0.52
CLSTN3-208ENST00000538933 SENP3-EIF4A1A0A087X0R7 540 aa18.32■□□□□ 0.52
CLSTN3-208ENST00000538933 C1QTNF8P60827 252 aa18.32■□□□□ 0.52
CLSTN3-208ENST00000538933 PROM2Q8N271 834 aa18.32■□□□□ 0.52
CLSTN3-208ENST00000538933 NUTM2GQ5VZR2 741 aa18.31■□□□□ 0.52
CLSTN3-208ENST00000538933 PTF1AQ7RTS3 328 aa18.31■□□□□ 0.52
CLSTN3-208ENST00000538933 THRAP3Q9Y2W1 955 aaKnown RBP18.31■□□□□ 0.52
CLSTN3-208ENST00000538933 GOLGB1Q14789 3259 aaKnown RBP18.31■□□□□ 0.52
CLSTN3-208ENST00000538933 ATP7BP35670 1465 aa18.31■□□□□ 0.52
CLSTN3-208ENST00000538933 CPDO75976 1380 aa18.3■□□□□ 0.52
CLSTN3-208ENST00000538933 C11orf95C9JLR9 678 aaPredicted RBP18.29■□□□□ 0.52
CLSTN3-208ENST00000538933 ZBTB7AO95365 584 aa18.29■□□□□ 0.52
CLSTN3-208ENST00000538933 NUDT16Q96DE0 195 aaKnown RBP18.28■□□□□ 0.52
CLSTN3-208ENST00000538933 SYT17Q9BSW7 474 aa18.28■□□□□ 0.52
CLSTN3-208ENST00000538933 OVOS2A0A0G2JMS6 1433 aa18.27■□□□□ 0.52
CLSTN3-208ENST00000538933 OVOS2A0A0J9YW53 1432 aa18.27■□□□□ 0.52
CLSTN3-208ENST00000538933 OVOS2Q6IE36 1432 aa18.27■□□□□ 0.52
CLSTN3-208ENST00000538933 POLR3AO14802 1390 aaPredicted RBP18.27■□□□□ 0.51
CLSTN3-208ENST00000538933 ATF5Q9Y2D1 282 aaPredicted RBP18.26■□□□□ 0.51
CLSTN3-208ENST00000538933 COL5A2P05997 1499 aaPredicted RBP18.26■□□□□ 0.51
CLSTN3-208ENST00000538933 USP19O94966 1318 aa18.25■□□□□ 0.51
CLSTN3-208ENST00000538933 LRRC37A3O60309 1634 aa18.25■□□□□ 0.51
CLSTN3-208ENST00000538933 SGIP1Q9BQI5 828 aa18.25■□□□□ 0.51
CLSTN3-208ENST00000538933 FHDC1Q9C0D6 1143 aaPredicted RBP18.25■□□□□ 0.51
CLSTN3-208ENST00000538933 BCL11BQ9C0K0 894 aaPredicted RBP18.25■□□□□ 0.51
CLSTN3-208ENST00000538933 TOPAZ1Q8N9V7 1692 aa18.25■□□□□ 0.51
CLSTN3-208ENST00000538933 ARHGEF28Q8N1W1 1705 aaKnown RBP18.23■□□□□ 0.51
CLSTN3-208ENST00000538933 ACEP12821 1306 aa18.23■□□□□ 0.51
CLSTN3-208ENST00000538933 CRB1P82279 1406 aa18.22■□□□□ 0.51
CLSTN3-208ENST00000538933 PLEKHG3A1L390 1219 aa18.21■□□□□ 0.51
CLSTN3-208ENST00000538933 ABTB2Q8N961 1025 aa18.21■□□□□ 0.51
CLSTN3-208ENST00000538933 BCL9O00512 1426 aa18.21■□□□□ 0.51
CLSTN3-208ENST00000538933 GCP02774 474 aa18.2■□□□□ 0.5
CLSTN3-208ENST00000538933 MARCH10Q8NA82 808 aaPredicted RBP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms