RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 FYB1O15117 783 aa11.88□□□□□ -0.51
COL4A6-208ENST00000538570 KINO60870 393 aaKnown RBP11.88□□□□□ -0.51
COL4A6-208ENST00000538570 CAVIN1Q6NZI2 390 aaKnown RBP11.88□□□□□ -0.51
COL4A6-208ENST00000538570 FGD5Q6ZNL6 1462 aa11.88□□□□□ -0.51
COL4A6-208ENST00000538570 PSME1Q06323 249 aa11.88□□□□□ -0.51
COL4A6-208ENST00000538570 KIF7Q2M1P5 1343 aa11.88□□□□□ -0.51
COL4A6-208ENST00000538570 GAPVD1Q14C86 1478 aa11.88□□□□□ -0.51
COL4A6-208ENST00000538570 ERICH4A6NGS2 130 aa11.88□□□□□ -0.51
COL4A6-208ENST00000538570 PANK1Q8TE04 598 aa11.88□□□□□ -0.51
COL4A6-208ENST00000538570 SAMD1Q6SPF0 538 aaPredicted RBP11.87□□□□□ -0.51
COL4A6-208ENST00000538570 MAGEC2Q9UBF1 373 aaPredicted RBP11.87□□□□□ -0.51
COL4A6-208ENST00000538570 CGNQ9P2M7 1197 aaKnown RBP11.87□□□□□ -0.51
COL4A6-208ENST00000538570 SART3Q15020 963 aaKnown RBP11.87□□□□□ -0.51
COL4A6-208ENST00000538570 FSD1Q9BTV5 496 aa11.87□□□□□ -0.51
COL4A6-208ENST00000538570 USP8P40818 1118 aa11.87□□□□□ -0.51
COL4A6-208ENST00000538570 MCM2P49736 904 aa11.86□□□□□ -0.51
COL4A6-208ENST00000538570 NCAPD3P42695 1498 aa11.86□□□□□ -0.51
COL4A6-208ENST00000538570 HMOX1P09601 288 aa11.86□□□□□ -0.51
COL4A6-208ENST00000538570 SKIDA1Q1XH10 827 aa11.86□□□□□ -0.51
COL4A6-208ENST00000538570 PDCP20941 246 aa11.85□□□□□ -0.51
COL4A6-208ENST00000538570 AIMP1Q12904 312 aaKnown RBP11.85□□□□□ -0.51
COL4A6-208ENST00000538570 ZNF396Q96N95 335 aaPredicted RBP11.85□□□□□ -0.51
COL4A6-208ENST00000538570 HIP1O00291 1037 aa11.85□□□□□ -0.51
COL4A6-208ENST00000538570 TXLNAP40222 546 aa11.85□□□□□ -0.51
COL4A6-208ENST00000538570 PIP4K2AP48426 406 aaPredicted RBP11.85□□□□□ -0.51
COL4A6-208ENST00000538570 AXDND1Q5T1B0 1012 aaPredicted RBP11.85□□□□□ -0.51
COL4A6-208ENST00000538570 RAPGEF4Q8WZA2 1011 aa11.85□□□□□ -0.51
COL4A6-208ENST00000538570 CDK5RAP3Q96JB5 506 aa11.85□□□□□ -0.51
COL4A6-208ENST00000538570 KDM4AO75164 1064 aa11.84□□□□□ -0.51
COL4A6-208ENST00000538570 PRPF40AO75400 957 aaKnown RBP11.84□□□□□ -0.51
COL4A6-208ENST00000538570 CLASRPQ8N2M8 674 aaKnown RBP11.84□□□□□ -0.51
COL4A6-208ENST00000538570 TBC1D2BQ9UPU7 963 aa11.84□□□□□ -0.51
COL4A6-208ENST00000538570 MIA2Q96PC5 1412 aa11.84□□□□□ -0.51
COL4A6-208ENST00000538570 OSCARQ8IYS5 282 aa11.84□□□□□ -0.51
COL4A6-208ENST00000538570 ERLIN2O94905 339 aa11.84□□□□□ -0.51
COL4A6-208ENST00000538570 DHX8Q14562 1220 aaKnown RBP11.84□□□□□ -0.51
COL4A6-208ENST00000538570 RABEP1Q15276 862 aa11.83□□□□□ -0.52
COL4A6-208ENST00000538570 SYCP1Q15431 976 aa11.83□□□□□ -0.52
COL4A6-208ENST00000538570 MTMR7Q9Y216 660 aa11.83□□□□□ -0.52
COL4A6-208ENST00000538570 GNAI3P08754 354 aa11.83□□□□□ -0.52
COL4A6-208ENST00000538570 CCDC7Q96M83 1385 aa11.83□□□□□ -0.52
COL4A6-208ENST00000538570 NEK4P51957 841 aa11.83□□□□□ -0.52
COL4A6-208ENST00000538570 BRPF1P55201 1214 aaPredicted RBP11.83□□□□□ -0.52
COL4A6-208ENST00000538570 IPO4Q8TEX9 1081 aaKnown RBP11.83□□□□□ -0.52
COL4A6-208ENST00000538570 FMNL2Q96PY5 1086 aa11.83□□□□□ -0.52
COL4A6-208ENST00000538570 IKQ13123 557 aaPredicted RBP11.83□□□□□ -0.52
COL4A6-208ENST00000538570 HMGB1P09429 215 aaKnown RBP11.82□□□□□ -0.52
COL4A6-208ENST00000538570 ZRSR2Q15696 482 aaKnown RBP11.82□□□□□ -0.52
COL4A6-208ENST00000538570 CNTLNQ9NXG0 1405 aa11.82□□□□□ -0.52
COL4A6-208ENST00000538570 RAD54L2Q9Y4B4 1467 aa11.82□□□□□ -0.52
COL4A6-208ENST00000538570 CT47B1P0C2W7 299 aaPredicted RBP11.82□□□□□ -0.52
COL4A6-208ENST00000538570 CCAR1Q8IX12 1150 aaKnown RBP11.82□□□□□ -0.52
COL4A6-208ENST00000538570 ZNHIT6Q9NWK9 470 aaKnown RBP11.82□□□□□ -0.52
COL4A6-208ENST00000538570 ESPNB1AK53 854 aa11.82□□□□□ -0.52
COL4A6-208ENST00000538570 GTF2A1P52655 376 aaPredicted RBP11.82□□□□□ -0.52
COL4A6-208ENST00000538570 GRPEL1Q9HAV7 217 aa11.82□□□□□ -0.52
COL4A6-208ENST00000538570 GOLGA6L10A6NI86 522 aa11.81□□□□□ -0.52
COL4A6-208ENST00000538570 STK38Q15208 465 aa11.81□□□□□ -0.52
COL4A6-208ENST00000538570 DNAJC2Q99543 621 aaKnown RBP11.81□□□□□ -0.52
COL4A6-208ENST00000538570 KIAA0754O94854 1291 aa11.81□□□□□ -0.52
COL4A6-208ENST00000538570 SLC3A2P08195 630 aaKnown RBP11.81□□□□□ -0.52
COL4A6-208ENST00000538570 ATP2B1P20020 1258 aa11.81□□□□□ -0.52
COL4A6-208ENST00000538570 CCDC30Q5VVM6 783 aa11.81□□□□□ -0.52
COL4A6-208ENST00000538570 SURF6O75683 361 aaKnown RBP11.81□□□□□ -0.52
COL4A6-208ENST00000538570 SPC24Q8NBT2 197 aa11.81□□□□□ -0.52
COL4A6-208ENST00000538570 FIBPO43427 364 aa11.8□□□□□ -0.52
COL4A6-208ENST00000538570 SERPINC1P01008 464 aa11.8□□□□□ -0.52
COL4A6-208ENST00000538570 TMEM132AQ24JP5 1023 aa11.8□□□□□ -0.52
COL4A6-208ENST00000538570 MYOM3Q5VTT5 1437 aa11.8□□□□□ -0.52
COL4A6-208ENST00000538570 CYB5RLQ6IPT4 315 aa11.8□□□□□ -0.52
COL4A6-208ENST00000538570 ERC1Q8IUD2 1116 aa11.8□□□□□ -0.52
COL4A6-208ENST00000538570 JMYQ8N9B5 988 aa11.8□□□□□ -0.52
COL4A6-208ENST00000538570 PDCL3Q9H2J4 239 aa11.8□□□□□ -0.52
COL4A6-208ENST00000538570 BRD4O60885 1362 aaPredicted RBP11.8□□□□□ -0.52
COL4A6-208ENST00000538570 KRT18P05783 430 aaKnown RBP11.8□□□□□ -0.52
COL4A6-208ENST00000538570 DACH1Q9UI36 760 aa11.8□□□□□ -0.52
COL4A6-208ENST00000538570 CCDC192P0DO97 292 aa11.8□□□□□ -0.52
COL4A6-208ENST00000538570 WWC2Q6AWC2 1192 aa11.79□□□□□ -0.52
COL4A6-208ENST00000538570 LUC7LQ9NQ29 371 aaKnown RBP11.79□□□□□ -0.52
COL4A6-208ENST00000538570 DHX37Q8IY37 1157 aaKnown RBP11.79□□□□□ -0.52
COL4A6-208ENST00000538570 GCC1Q96CN9 775 aa11.79□□□□□ -0.52
COL4A6-208ENST00000538570 PHF23Q9BUL5 403 aaPredicted RBP11.79□□□□□ -0.52
COL4A6-208ENST00000538570 PPFIBP1Q86W92 1011 aa11.79□□□□□ -0.52
COL4A6-208ENST00000538570 PDZRN3Q9UPQ7 1066 aa11.79□□□□□ -0.52
COL4A6-208ENST00000538570 STAC3Q96MF2 364 aa11.79□□□□□ -0.52
COL4A6-208ENST00000538570 SSR1P43307 286 aaKnown RBP11.79□□□□□ -0.52
COL4A6-208ENST00000538570 CBX1P83916 185 aa11.79□□□□□ -0.52
COL4A6-208ENST00000538570 CEBPZQ03701 1054 aaKnown RBP11.79□□□□□ -0.52
COL4A6-208ENST00000538570 TXLNBQ8N3L3 684 aa11.79□□□□□ -0.52
COL4A6-208ENST00000538570 GGNBP2Q9H3C7 697 aa11.79□□□□□ -0.52
COL4A6-208ENST00000538570 CCDC181Q5TID7 509 aa11.78□□□□□ -0.52
COL4A6-208ENST00000538570 ANKRD18AQ8IVF6 992 aa11.78□□□□□ -0.52
COL4A6-208ENST00000538570 CCDC112Q8NEF3 446 aa11.78□□□□□ -0.52
COL4A6-208ENST00000538570 PDCL2Q8N4E4 241 aa11.78□□□□□ -0.52
COL4A6-208ENST00000538570 SEPT7Q16181 437 aaKnown RBP11.78□□□□□ -0.52
COL4A6-208ENST00000538570 GOLGA6L7A0A1B0GV03 622 aa11.78□□□□□ -0.52
COL4A6-208ENST00000538570 TNMDQ9H2S6 317 aa11.78□□□□□ -0.52
COL4A6-208ENST00000538570 CLGNO14967 610 aa11.77□□□□□ -0.52
COL4A6-208ENST00000538570 STIM1Q13586 685 aa11.77□□□□□ -0.52
COL4A6-208ENST00000538570 ANKRD1Q15327 319 aa11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 186.2 ms