RNA–Protein interactions for RNA: ENST00000520497.1

VAPB-206, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 937 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-206ENST00000520497 KNSTRNQ9Y448 316 aa11.66□□□□□ -0.54
VAPB-206ENST00000520497 POLR3AO14802 1390 aaPredicted RBP11.66□□□□□ -0.54
VAPB-206ENST00000520497 PLEKHG3A1L390 1219 aa11.65□□□□□ -0.54
VAPB-206ENST00000520497 TERF2IPQ9NYB0 399 aa11.65□□□□□ -0.54
VAPB-206ENST00000520497 EDC4Q6P2E9 1401 aaKnown RBP11.65□□□□□ -0.54
VAPB-206ENST00000520497 TRPM3Q9HCF6 1732 aaPredicted RBP11.64□□□□□ -0.55
VAPB-206ENST00000520497 CCER2I3L3R5 266 aa11.64□□□□□ -0.55
VAPB-206ENST00000520497 C19orf44Q9H6X5 657 aa11.64□□□□□ -0.55
VAPB-206ENST00000520497 PIK3C2AO00443 1686 aa11.64□□□□□ -0.55
VAPB-206ENST00000520497 ROBO1Q9Y6N7 1651 aa11.64□□□□□ -0.55
VAPB-206ENST00000520497 NSD2O96028 1365 aa11.64□□□□□ -0.55
VAPB-206ENST00000520497 MST1RQ04912 1400 aa11.63□□□□□ -0.55
VAPB-206ENST00000520497 RALBP1Q15311 655 aa11.63□□□□□ -0.55
VAPB-206ENST00000520497 HDGFL2Q7Z4V5 671 aaPredicted RBP11.63□□□□□ -0.55
VAPB-206ENST00000520497 CGNL1Q0VF96 1302 aa11.62□□□□□ -0.55
VAPB-206ENST00000520497 USP6P35125 1406 aa11.62□□□□□ -0.55
VAPB-206ENST00000520497 SSH2Q76I76 1423 aa11.62□□□□□ -0.55
VAPB-206ENST00000520497 C1orf167Q5SNV9 1468 aa11.62□□□□□ -0.55
VAPB-206ENST00000520497 ACEP12821 1306 aa11.61□□□□□ -0.55
VAPB-206ENST00000520497 NUTM2FA1L443 756 aa11.61□□□□□ -0.55
VAPB-206ENST00000520497 CC2D1BQ5T0F9 858 aaKnown RBP11.61□□□□□ -0.55
VAPB-206ENST00000520497 C14orf37Q86TY3 774 aa11.61□□□□□ -0.55
VAPB-206ENST00000520497 MSH6P52701 1360 aa11.61□□□□□ -0.55
VAPB-206ENST00000520497 MYBBP1AQ9BQG0 1328 aaKnown RBP11.6□□□□□ -0.55
VAPB-206ENST00000520497 ALS2Q96Q42 1657 aa11.6□□□□□ -0.55
VAPB-206ENST00000520497 ZNF692Q9BU19 519 aaPredicted RBP11.6□□□□□ -0.55
VAPB-206ENST00000520497 POTEAQ6S8J7 498 aa11.59□□□□□ -0.55
VAPB-206ENST00000520497 SLAIN2Q9P270 581 aa11.59□□□□□ -0.55
VAPB-206ENST00000520497 NHSL1Q5SYE7 1610 aa11.59□□□□□ -0.55
VAPB-206ENST00000520497 BRD4O60885 1362 aaPredicted RBP11.58□□□□□ -0.56
VAPB-206ENST00000520497 CENPBP07199 599 aaPredicted RBP11.58□□□□□ -0.56
VAPB-206ENST00000520497 KCNA4P22459 653 aa11.58□□□□□ -0.56
VAPB-206ENST00000520497 SHPRHQ149N8 1683 aa11.58□□□□□ -0.56
VAPB-206ENST00000520497 FYB1O15117 783 aa11.57□□□□□ -0.56
VAPB-206ENST00000520497 ATF3P18847 181 aa11.57□□□□□ -0.56
VAPB-206ENST00000520497 CNGB1Q14028 1251 aaPredicted RBP11.57□□□□□ -0.56
VAPB-206ENST00000520497 CADPS2Q86UW7 1296 aa11.57□□□□□ -0.56
VAPB-206ENST00000520497 PMFBP1Q8TBY8 1022 aa11.57□□□□□ -0.56
VAPB-206ENST00000520497 PHF8Q9UPP1 1060 aa11.57□□□□□ -0.56
VAPB-206ENST00000520497 OVOS2A0A0J9YW53 1432 aa11.57□□□□□ -0.56
VAPB-206ENST00000520497 OVOS2Q6IE36 1432 aa11.57□□□□□ -0.56
VAPB-206ENST00000520497 CRYBG1Q9Y4K1 1723 aa11.57□□□□□ -0.56
VAPB-206ENST00000520497 LTN1O94822 1766 aa11.56□□□□□ -0.56
VAPB-206ENST00000520497 PHLPP1O60346 1717 aa11.56□□□□□ -0.56
VAPB-206ENST00000520497 CCDC184Q52MB2 194 aa11.56□□□□□ -0.56
VAPB-206ENST00000520497 POTEHQ6S545 545 aa11.56□□□□□ -0.56
VAPB-206ENST00000520497 NLRP13Q86W25 1043 aa11.56□□□□□ -0.56
VAPB-206ENST00000520497 TTC21BQ7Z4L5 1316 aa11.56□□□□□ -0.56
VAPB-206ENST00000520497 TTC21AQ8NDW8 1320 aa11.56□□□□□ -0.56
VAPB-206ENST00000520497 PPP2R1AP30153 589 aa11.55□□□□□ -0.56
VAPB-206ENST00000520497 ESCO1Q5FWF5 840 aa11.55□□□□□ -0.56
VAPB-206ENST00000520497 NGDNQ8NEJ9 315 aaKnown RBP11.55□□□□□ -0.56
VAPB-206ENST00000520497 COL16A1Q07092 1604 aaPredicted RBP11.54□□□□□ -0.56
VAPB-206ENST00000520497 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.54□□□□□ -0.561e-7■■□□□ 14.1
VAPB-206ENST00000520497 ORAI2Q96SN7 254 aa11.54□□□□□ -0.56
VAPB-206ENST00000520497 GGNBP2Q9H3C7 697 aa11.54□□□□□ -0.56
VAPB-206ENST00000520497 LRP6O75581 1613 aa11.53□□□□□ -0.56
VAPB-206ENST00000520497 PXDNQ92626 1479 aa11.53□□□□□ -0.56
VAPB-206ENST00000520497 MORC1Q86VD1 984 aa11.53□□□□□ -0.56
VAPB-206ENST00000520497 NME9Q86XW9 330 aa11.53□□□□□ -0.56
VAPB-206ENST00000520497 MRS2Q9HD23 443 aa11.53□□□□□ -0.56
VAPB-206ENST00000520497 USP31Q70CQ4 1352 aa11.53□□□□□ -0.56
VAPB-206ENST00000520497 PHRF1Q9P1Y6 1649 aaKnown RBP11.53□□□□□ -0.56
VAPB-206ENST00000520497 SMG6Q86US8 1419 aaKnown RBP11.52□□□□□ -0.56
VAPB-206ENST00000520497 ABCA3Q99758 1704 aa11.52□□□□□ -0.56
VAPB-206ENST00000520497 PEAK1Q9H792 1746 aa11.52□□□□□ -0.56
VAPB-206ENST00000520497 DDX17Q92841 729 aaKnown RBP11.52□□□□□ -0.57
VAPB-206ENST00000520497 AATKQ6ZMQ8 1374 aa11.51□□□□□ -0.57
VAPB-206ENST00000520497 COL3A1P02461 1466 aaPredicted RBP11.51□□□□□ -0.57
VAPB-206ENST00000520497 SLIT3O75094 1523 aa11.5□□□□□ -0.57
VAPB-206ENST00000520497 BRINP3Q76B58 766 aa11.5□□□□□ -0.57
VAPB-206ENST00000520497 ZRANB1Q9UGI0 708 aa11.5□□□□□ -0.57
VAPB-206ENST00000520497 NFAT5O94916 1531 aa11.5□□□□□ -0.57
VAPB-206ENST00000520497 AHDC1Q5TGY3 1603 aaPredicted RBP11.49□□□□□ -0.57
VAPB-206ENST00000520497 RGPD5Q99666 1765 aa11.49□□□□□ -0.57
VAPB-206ENST00000520497 FOXO3O43524 673 aa11.49□□□□□ -0.57
VAPB-206ENST00000520497 COG3Q96JB2 828 aa11.49□□□□□ -0.57
VAPB-206ENST00000520497 JCADQ9P266 1359 aa11.49□□□□□ -0.57
VAPB-206ENST00000520497 CDK12Q9NYV4 1490 aaPredicted RBP11.49□□□□□ -0.57
VAPB-206ENST00000520497 PSME1Q06323 249 aa11.48□□□□□ -0.57
VAPB-206ENST00000520497 PNISRQ8TF01 805 aaKnown RBP11.48□□□□□ -0.57
VAPB-206ENST00000520497 NPHP3Q7Z494 1330 aa11.48□□□□□ -0.57
VAPB-206ENST00000520497 SBNO1A3KN83 1393 aa11.48□□□□□ -0.57
VAPB-206ENST00000520497 INSRP06213 1382 aa11.48□□□□□ -0.57
VAPB-206ENST00000520497 RGPD1P0DJD0 1748 aa11.47□□□□□ -0.57
VAPB-206ENST00000520497 PNPLA6Q8IY17 1366 aa11.47□□□□□ -0.57
VAPB-206ENST00000520497 TNNT2P45379 298 aaPredicted RBP11.47□□□□□ -0.57
VAPB-206ENST00000520497 YTHDC1Q96MU7 727 aaKnown RBP11.47□□□□□ -0.57
VAPB-206ENST00000520497 TNS3Q68CZ2 1445 aa11.46□□□□□ -0.57
VAPB-206ENST00000520497 NUTM2BA6NNL0 878 aaPredicted RBP11.46□□□□□ -0.57
VAPB-206ENST00000520497 NUTM2EB1AL46 878 aaPredicted RBP11.46□□□□□ -0.57
VAPB-206ENST00000520497 MTHFSP49914 203 aa11.46□□□□□ -0.57
VAPB-206ENST00000520497 KRT28Q7Z3Y7 464 aa11.46□□□□□ -0.57
VAPB-206ENST00000520497 NUTM2AQ8IVF1 878 aaPredicted RBP11.46□□□□□ -0.57
VAPB-206ENST00000520497 BLMP54132 1417 aaPredicted RBP11.45□□□□□ -0.58
VAPB-206ENST00000520497 XPCQ01831 940 aaPredicted RBP11.45□□□□□ -0.58
VAPB-206ENST00000520497 ABTB2Q8N961 1025 aa11.45□□□□□ -0.58
VAPB-206ENST00000520497 POLKQ9UBT6 870 aa11.45□□□□□ -0.58
VAPB-206ENST00000520497 RGPD2P0DJD1 1756 aa11.45□□□□□ -0.58
VAPB-206ENST00000520497 COL18A1P39060 1754 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 160.2 ms