RNA–Protein interactions for RNA: ENST00000504849.5

RFC1-208, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 873 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-208ENST00000504849 HOXA2O43364 376 aa8.77□□□□□ -1.01
RFC1-208ENST00000504849 ITGB2P05107 769 aa8.77□□□□□ -1.01
RFC1-208ENST00000504849 SLURP2P0DP57 97 aa8.77□□□□□ -1.01
RFC1-208ENST00000504849 ZFAND3Q9H8U3 227 aa8.77□□□□□ -1.01
RFC1-208ENST00000504849 LINC01559Q495D7 138 aa8.76□□□□□ -1.01
RFC1-208ENST00000504849 C6orf118Q5T5N4 469 aa8.76□□□□□ -1.01
RFC1-208ENST00000504849 RBM26Q5T8P6 1007 aaKnown RBP8.76□□□□□ -1.01
RFC1-208ENST00000504849 KRTAP1-3Q8IUG1 177 aa8.76□□□□□ -1.01
RFC1-208ENST00000504849 PLEKHG3A1L390 1219 aa8.75□□□□□ -1.01
RFC1-208ENST00000504849 SOS2Q07890 1332 aaPredicted RBP8.75□□□□□ -1.01
RFC1-208ENST00000504849 VARSP26640 1264 aaKnown RBP8.74□□□□□ -1.01
RFC1-208ENST00000504849 PAXIP1Q6ZW49 1069 aaPredicted RBP8.74□□□□□ -1.01
RFC1-208ENST00000504849 BAP1Q92560 729 aa8.74□□□□□ -1.01
RFC1-208ENST00000504849 ITPKCQ96DU7 683 aa8.74□□□□□ -1.01
RFC1-208ENST00000504849 CFAP44Q96MT7 982 aa8.74□□□□□ -1.01
RFC1-208ENST00000504849 UNC93B1Q9H1C4 597 aa8.74□□□□□ -1.01
RFC1-208ENST00000504849 USP46P62068 366 aa8.73□□□□□ -1.01
RFC1-208ENST00000504849 NANOS1Q8WY41 292 aaKnown RBP8.73□□□□□ -1.01
RFC1-208ENST00000504849 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.73□□□□□ -1.01
RFC1-208ENST00000504849 ZIC2O95409 532 aaPredicted RBP8.72□□□□□ -1.01
RFC1-208ENST00000504849 CCNYL3P0C7X3 344 aa8.72□□□□□ -1.01
RFC1-208ENST00000504849 PLA2G4EQ3MJ16 856 aa8.72□□□□□ -1.01
RFC1-208ENST00000504849 ZNF511Q8NB15 262 aa8.72□□□□□ -1.01
RFC1-208ENST00000504849 SPOCK3Q9BQ16 436 aa8.72□□□□□ -1.01
RFC1-208ENST00000504849 RETREG3Q86VR2 466 aa8.71□□□□□ -1.02
RFC1-208ENST00000504849 MSTNO14793 375 aa8.7□□□□□ -1.02
RFC1-208ENST00000504849 PROCP04070 461 aa8.7□□□□□ -1.02
RFC1-208ENST00000504849 NR3C2P08235 984 aa8.7□□□□□ -1.02
RFC1-208ENST00000504849 LINC00528Q8N1L1 170 aa8.7□□□□□ -1.02
RFC1-208ENST00000504849 MARSP56192 900 aaKnown RBP8.69□□□□□ -1.02
RFC1-208ENST00000504849 MEIOBQ8N635 442 aa8.69□□□□□ -1.02
RFC1-208ENST00000504849 CDK15Q96Q40 435 aa8.69□□□□□ -1.02
RFC1-208ENST00000504849 EVA1BQ9NVM1 165 aa8.69□□□□□ -1.02
RFC1-208ENST00000504849 BMP2P12643 396 aa8.68□□□□□ -1.02
RFC1-208ENST00000504849 Q8N3U1 123 aa8.68□□□□□ -1.02
RFC1-208ENST00000504849 SCARF2Q96GP6 870 aaPredicted RBP8.68□□□□□ -1.02
RFC1-208ENST00000504849 MS4A1P11836 297 aa8.67□□□□□ -1.02
RFC1-208ENST00000504849 PTSQ03393 145 aa8.67□□□□□ -1.02
RFC1-208ENST00000504849 PTPRNQ16849 979 aa8.66□□□□□ -1.02
RFC1-208ENST00000504849 KCNH2Q12809 1159 aa8.65□□□□□ -1.02
RFC1-208ENST00000504849 DCAF5Q96JK2 942 aa8.65□□□□□ -1.02
RFC1-208ENST00000504849 PCDHGC3Q9UN70 934 aa8.64□□□□□ -1.03
RFC1-208ENST00000504849 GRM5P41594 1212 aa8.63□□□□□ -1.03
RFC1-208ENST00000504849 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.63□□□□□ -1.032e-9■■□□□ 14.2
RFC1-208ENST00000504849 LYPD4Q6UWN0 246 aa8.63□□□□□ -1.03
RFC1-208ENST00000504849 TESPA1A2RU30 521 aaPredicted RBP8.62□□□□□ -1.03
RFC1-208ENST00000504849 CCDC155Q8N6L0 562 aa8.62□□□□□ -1.03
RFC1-208ENST00000504849 FAM174AQ8TBP5 190 aa8.62□□□□□ -1.03
RFC1-208ENST00000504849 UPP2O95045 317 aa8.6□□□□□ -1.03
RFC1-208ENST00000504849 NR5A1Q13285 461 aa8.6□□□□□ -1.03
RFC1-208ENST00000504849 SLC35F4A4IF30 521 aa8.59□□□□□ -1.03
RFC1-208ENST00000504849 TTLL8A6PVC2 850 aa8.59□□□□□ -1.03
RFC1-208ENST00000504849 K7ELQ4 463 aaPredicted RBP8.59□□□□□ -1.03
RFC1-208ENST00000504849 ADAMTS2O95450 1211 aa8.59□□□□□ -1.03
RFC1-208ENST00000504849 VWA5B2Q8N398 1253 aa8.59□□□□□ -1.03
RFC1-208ENST00000504849 FOXJ1Q92949 421 aa8.59□□□□□ -1.03
RFC1-208ENST00000504849 ARID5BQ14865 1188 aa8.58□□□□□ -1.04
RFC1-208ENST00000504849 KRTAP4-12Q9BQ66 201 aa8.58□□□□□ -1.04
RFC1-208ENST00000504849 ITGA6P23229 1130 aa8.57□□□□□ -1.04
RFC1-208ENST00000504849 C4orf48Q5BLP8 95 aa8.57□□□□□ -1.04
RFC1-208ENST00000504849 LCE3BQ5TA77 95 aa8.57□□□□□ -1.04
RFC1-208ENST00000504849 CNTNAP5Q8WYK1 1306 aa8.56□□□□□ -1.04
RFC1-208ENST00000504849 CELA2BP08218 269 aaPredicted RBP8.56□□□□□ -1.04
RFC1-208ENST00000504849 FIGNL2A6NMB9 653 aa8.55□□□□□ -1.04
RFC1-208ENST00000504849 C6orf229H3BNL8 230 aa8.55□□□□□ -1.04
RFC1-208ENST00000504849 FDX1P10109 184 aa8.55□□□□□ -1.04
RFC1-208ENST00000504849 MDM2Q00987 491 aaPredicted RBP8.55□□□□□ -1.04
RFC1-208ENST00000504849 TSEN34Q9BSV6 310 aaKnown RBP8.55□□□□□ -1.04
RFC1-208ENST00000504849 SPTLC1O15269 473 aa8.54□□□□□ -1.04
RFC1-208ENST00000504849 TSHZ2Q9NRE2 1034 aa8.54□□□□□ -1.04
RFC1-208ENST00000504849 SV2AQ7L0J3 742 aa8.53□□□□□ -1.04
RFC1-208ENST00000504849 GALNT6Q8NCL4 622 aa8.53□□□□□ -1.04
RFC1-208ENST00000504849 CDC14CA4D256 554 aa8.52□□□□□ -1.05
RFC1-208ENST00000504849 SRSF11Q05519 484 aaKnown RBP8.52□□□□□ -1.05
RFC1-208ENST00000504849 GAS6Q14393 721 aa8.52□□□□□ -1.05
RFC1-208ENST00000504849 DESI1Q6ICB0 168 aa8.51□□□□□ -1.05
RFC1-208ENST00000504849 P3H3Q8IVL6 736 aa8.51□□□□□ -1.05
RFC1-208ENST00000504849 PRR7Q8TB68 274 aa8.51□□□□□ -1.05
RFC1-208ENST00000504849 BAG6P46379 1132 aa8.5□□□□□ -1.05
RFC1-208ENST00000504849 MAP3K10Q02779 954 aa8.5□□□□□ -1.05
RFC1-208ENST00000504849 SH3RF1Q7Z6J0 888 aa8.5□□□□□ -1.05
RFC1-208ENST00000504849 FAM217BQ9NTX9 383 aaPredicted RBP8.5□□□□□ -1.05
RFC1-208ENST00000504849 PHF20L1A8MW92 1017 aa8.49□□□□□ -1.05
RFC1-208ENST00000504849 SPINT1O43278 529 aa8.49□□□□□ -1.05
RFC1-208ENST00000504849 KRTAP9-9Q9BYP9 154 aa8.49□□□□□ -1.05
RFC1-208ENST00000504849 KRTAP9-4Q9BYQ2 154 aa8.49□□□□□ -1.05
RFC1-208ENST00000504849 SENP3-EIF4A1A0A087X0R7 540 aa8.48□□□□□ -1.05
RFC1-208ENST00000504849 SMYD5Q6GMV2 418 aa8.48□□□□□ -1.05
RFC1-208ENST00000504849 NUTM1Q86Y26 1132 aa8.48□□□□□ -1.05
RFC1-208ENST00000504849 FSHRP23945 695 aa8.47□□□□□ -1.05
RFC1-208ENST00000504849 MAP2K5Q13163 448 aa8.47□□□□□ -1.05
RFC1-208ENST00000504849 F12P00748 615 aaPredicted RBP8.46□□□□□ -1.06
RFC1-208ENST00000504849 C1QTNF2Q9BXJ5 285 aa8.46□□□□□ -1.06
RFC1-208ENST00000504849 MAP10Q9P2G4 905 aa8.46□□□□□ -1.06
RFC1-208ENST00000504849 FURINP09958 794 aa8.45□□□□□ -1.06
RFC1-208ENST00000504849 CTHP32929 405 aa8.45□□□□□ -1.06
RFC1-208ENST00000504849 LYPD8Q6UX82 237 aa8.45□□□□□ -1.06
RFC1-208ENST00000504849 Q6ZVU0 165 aa8.45□□□□□ -1.06
RFC1-208ENST00000504849 GPIHBP1Q8IV16 184 aa8.45□□□□□ -1.06
RFC1-208ENST00000504849 IRF6O14896 467 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms